Rh6CG336600

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0005471
Physical Location & Seq
Reverse (-)
52445407 .. 52446291
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG336600.1

Sequence Viewer

Length: 885 bp
ATGAAGGTAATGCGAAAGGACAAGATCATGAAGAATAATCTTGCTGAATACATGAAATTTGAGAGGGATATACTAACAAAAGTTGATCATCCATTCATTGTCAAGCTTAGATACTCATTCCAAACCAAATACAGACTATATCTTGTGCTGGATTTTGTCAACGGAGGTCAGCTTTTCTTTCAACTCTACCACCATGGCCTTTTTTTGGAGGAGCTGGCACGAATATATGCAGCCGAGATTGTTTCTGCGGTGTCTCACCTTCATTCAAATGGCATAATGCATAGAGATGTTAAGCCTGAAAATATCCTATTGGATGCAGATGGCCATGCCATTTTAACTGATTTTGGGCTTGCGAAGAGCTTTGACGAAAACACGAGGTCTAATTCTCTATGTGGAACTGTAGAATACATGGCACCGGAAATAGTTCAGGGAAATGGCCATGATAAGGCAGCAGATTGGTGGAGTGTGGGAATTGTATTGTTTCAGATGCTTACTGGCAAGCTTCCTTTTACTGGGAACCGTCAGAAATGTCAAGAGAAGATAGTAAAGGAGAAAATTAAGTTGCCAAGTTTTTTGTCAAGTGAAGCACATTCTCTGTTGAAAGGCTTGTTAGCGAAGGACACAAGCAAGCGCCTAGGTTGTGGACCTCTGGGAGGTGATGAAGTCAAGCAGCACAAATGGTTCAAGCAAATTAATTGGAAGAAATTGGATGCTCGTGAAATCAAACCGAGCTTCCGACCTAACGTTCCCGGGCAGCACTGCATTGCCAACATTGAGAATTACTGGACTGACATGCCACTTGTGGACTCCCCGGCTGCTAGTCCGAAGGCTTCGTCTGGAAATCCCTTCTCCGGCTTTAGTTATGTTAGGTCTGCAGCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008285 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0035556 GO:0036211 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045727 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko01521 ko01522 ko04012 ko04066 ko04140 ko04150 ko04151 ko04152 ko04211 ko04212 ko04213 ko04350 ko04371 ko04666 ko04714 ko04910 ko04931 ko05165 ko05200 ko05205 ko05210 ko05212 ko05221 ko05224 ko05225 ko05226 ko05231 map01521 map01522 map04012 map04066 map04140 map04150 map04151 map04152 map04211 map04212 map04213 map04350 map04371 map04666 map04714 map04910 map04931 map05165 map05200 map05205 map05210 map05212 map05221 map05224 map05225 map05226 map05231
Pfam Domains
Protein Families
Pkinase Pkinase_C

Protein Analysis

294

Amino Acids

33.28

Weight (kDa)

9.17

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 228 7.5e-64 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 2 - 211 5.3e-29 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 47 - 128 1.6e-06 ABC1 atypical kinase-like domain
Kinase-like PF14531 69 - 211 5.7e-10 Kinase-like
Pkinase_fungal PF17667 80 - 160 7.2e-09 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 412
AciI CCGC 1 cut(s) 248
AclI AACGTT 1 cut(s) 744
AcoI YGGCCR 2 cut(s) 322, 436
AcsI RAATTY 1 cut(s) 56
AfiI CCNNNNNNNGG 5 cut(s) 205, 445, 512, 653, 851
AgsI TTSAA 4 cut(s) 182, 267, 601, 685
AluBI AGCT 6 cut(s) 106, 172, 214, 360, 502, 732
AluI AGCT 6 cut(s) 106, 172, 214, 360, 502, 732
Alw26I GTCTC 1 cut(s) 258
Ama87I CYCGRG 1 cut(s) 749
AoxI GGCC 3 cut(s) 196, 322, 436
ApeKI GCWGC 6 cut(s) 230, 449, 670, 754, 815, 875
ApoI RAATTY 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 818, 850
AseI ATTAAT 1 cut(s) 693
Asp700I GAANNNNTTC 1 cut(s) 423
AspA2I CCTAGG 1 cut(s) 634
AspLEI GCGC 1 cut(s) 633
AspS9I GGNCC 1 cut(s) 644
AsuC2I CCSGG 3 cut(s) 750, 751, 812
AsuHPI GGTGA 2 cut(s) 248, 668
AvaI CYCGRG 1 cut(s) 749
AvaII GGWCC 1 cut(s) 644
AvrII CCTAGG 1 cut(s) 634
BalI TGGCCA 2 cut(s) 324, 438
BanI GGYRCC 1 cut(s) 412
BauI CACGAG 2 cut(s) 373, 714
BbvI GCAGC 5 cut(s) 242, 461, 682, 766, 802
BccI CCATC 1 cut(s) 314
BclI TGATCA 1 cut(s) 85
BcnI CCSGG 3 cut(s) 750, 751, 812
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 2 cut(s) 635, 819
BfmI CTRYAG 2 cut(s) 399, 873
BfoI RGCGCY 1 cut(s) 634
BisI GCNGC 6 cut(s) 231, 450, 671, 755, 816, 876
BlnI CCTAGG 1 cut(s) 634
BlsI GCNGC 6 cut(s) 232, 451, 672, 756, 817, 877
Bme1390I CCNGG 3 cut(s) 750, 751, 812
Bme18I GGWCC 1 cut(s) 644
BmeT110I CYCGRG 1 cut(s) 749
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 2 cut(s) 414, 518
BmrFI CCNGG 3 cut(s) 750, 751, 812
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 3 cut(s) 304, 477, 700
BmuI ACTGGG 1 cut(s) 522
BpuMI CCSGG 3 cut(s) 750, 751, 812
BsaJI CCNNGG 4 cut(s) 193, 634, 749, 810
BsaWI WCCGGW 1 cut(s) 415
Bsc4I CCNNNNNNNGG 5 cut(s) 205, 445, 512, 653, 851
Bse1I ACTGG 3 cut(s) 499, 517, 788
Bse3DI GCAATG 1 cut(s) 762
BseDI CCNNGG 4 cut(s) 193, 634, 749, 810
BseGI GGATG 3 cut(s) 88, 319, 715
BseLI CCNNNNNNNGG 5 cut(s) 205, 445, 512, 653, 851
BseMI GCAATG 1 cut(s) 762
BseNI ACTGG 3 cut(s) 499, 517, 788
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 5 cut(s) 242, 461, 682, 766, 802
BshFI GGCC 3 cut(s) 198, 324, 438
BshNI GGYRCC 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 749
BsiSI CCGG 4 cut(s) 416, 750, 812, 852
BslI CCNNNNNNNGG 5 cut(s) 205, 445, 512, 653, 851
BsmAI GTCTC 1 cut(s) 258
BsnI GGCC 3 cut(s) 198, 324, 438
BsoBI CYCGRG 1 cut(s) 749
Bsp143I GATC 2 cut(s) 24, 85
Bsp19I CCATGG 1 cut(s) 193
BspACI CCGC 1 cut(s) 248
BspANI GGCC 3 cut(s) 198, 324, 438
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 2 cut(s) 414, 518
BspMAI CTGCAG 1 cut(s) 877
BspQI GCTCTTC 1 cut(s) 350
BspT107I GGYRCC 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 762
BsrI ACTGG 3 cut(s) 499, 517, 788
BssECI CCNNGG 4 cut(s) 193, 634, 749, 810
BssMI GATC 2 cut(s) 24, 85
BssSI CACGAG 2 cut(s) 373, 714
BssT1I CCWWGG 2 cut(s) 193, 634
Bst2BI CACGAG 2 cut(s) 373, 714
Bst4CI ACNGT 2 cut(s) 400, 521
Bst6I CTCTTC 1 cut(s) 350
BstC8I GCNNGC 4 cut(s) 216, 351, 500, 629
BstDEI CTNAG 1 cut(s) 107
BstDSI CCRYGG 1 cut(s) 193
BstENI CCTNNNNNAGG 1 cut(s) 651
BstF5I GGATG 3 cut(s) 88, 319, 715
BstH2I RGCGCY 1 cut(s) 634
BstHHI GCGC 1 cut(s) 633
BstKTI GATC 2 cut(s) 27, 88
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 2 cut(s) 24, 85
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 3 cut(s) 748, 749, 810
BstSFI CTRYAG 2 cut(s) 399, 873
BstV1I GCAGC 5 cut(s) 242, 461, 682, 766, 802
BsuRI GGCC 3 cut(s) 198, 324, 438
BtgI CCRYGG 1 cut(s) 193
BtsCI GGATG 3 cut(s) 88, 319, 715
BtsI GCAGTG 1 cut(s) 757
BtsIMutI CAGTG 1 cut(s) 757
Cac8I GCNNGC 4 cut(s) 216, 351, 500, 629
CciI TCATGA 1 cut(s) 27
CfoI GCGC 1 cut(s) 633
Cfr13I GGNCC 1 cut(s) 644
Cfr9I CCCGGG 1 cut(s) 749
CviAII CATG 7 cut(s) 28, 52, 194, 326, 409, 440, 793
DdeI CTNAG 1 cut(s) 107
DpnI GATC 2 cut(s) 26, 87
DpnII GATC 2 cut(s) 24, 85
EaeI YGGCCR 2 cut(s) 322, 436
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 2 cut(s) 193, 634
Eco47I GGWCC 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 749
EcoNI CCTNNNNNAGG 1 cut(s) 651
EcoT14I CCWWGG 2 cut(s) 193, 634
EcoT22I ATGCAT 1 cut(s) 282
ErhI CCWWGG 2 cut(s) 193, 634
FaeI CATG 7 cut(s) 31, 55, 197, 329, 412, 443, 796
FatI CATG 7 cut(s) 27, 51, 193, 325, 408, 439, 792
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 6 cut(s) 231, 450, 671, 755, 816, 876
FokI GGATG 3 cut(s) 75, 326, 722
Fsp4HI GCNGC 6 cut(s) 231, 450, 671, 755, 816, 876
FspBI CTAG 2 cut(s) 635, 819
GlaI GCGC 1 cut(s) 632
GluI GCNGC 6 cut(s) 231, 450, 671, 755, 816, 876
HaeII RGCGCY 1 cut(s) 634
HaeIII GGCC 3 cut(s) 198, 324, 438
HapII CCGG 4 cut(s) 416, 750, 812, 852
HhaI GCGC 1 cut(s) 633
Hin1II CATG 7 cut(s) 31, 55, 197, 329, 412, 443, 796
Hin6I GCGC 1 cut(s) 631
HinP1I GCGC 1 cut(s) 631
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 2 cut(s) 104, 500
HinfI GANTC 1 cut(s) 806
HpaII CCGG 4 cut(s) 416, 750, 812, 852
HphI GGTGA 2 cut(s) 248, 668
Hpy166II GTNNAC 3 cut(s) 160, 644, 805
Hpy188I TCNGA 4 cut(s) 486, 525, 737, 825
Hpy188III TCNNGA 4 cut(s) 28, 533, 716, 837
Hpy8I GTNNAC 3 cut(s) 160, 644, 805
HpyAV CCTTC 4 cut(s) 269, 610, 820, 856
HpyCH4III ACNGT 2 cut(s) 400, 521
HpyCH4IV ACGT 1 cut(s) 744
HpyCH4V TGCA 5 cut(s) 230, 280, 317, 762, 875
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 744
Hsp92II CATG 7 cut(s) 31, 55, 197, 329, 412, 443, 796
HspAI GCGC 1 cut(s) 631
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 24, 85
LguI GCTCTTC 1 cut(s) 350
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 5 cut(s) 242, 461, 682, 766, 802
LweI GCATC 3 cut(s) 304, 477, 700
MaeI CTAG 2 cut(s) 635, 819
MaeII ACGT 1 cut(s) 744
MalI GATC 2 cut(s) 26, 87
MboI GATC 2 cut(s) 24, 85
MboII GAAGA 4 cut(s) 43, 367, 550, 712
MlsI TGGCCA 2 cut(s) 324, 438
MluCI AATT 8 cut(s) 56, 382, 471, 555, 690, 694, 704, 778
MluNI TGGCCA 2 cut(s) 324, 438
MlyI GAGTC 1 cut(s) 800
MmeI TCCRAC 1 cut(s) 760
MnlI CCTC 6 cut(s) 57, 158, 202, 369, 647, 657
Mox20I TGGCCA 2 cut(s) 324, 438
Mph1103I ATGCAT 1 cut(s) 282
MroXI GAANNNNTTC 1 cut(s) 423
MscI TGGCCA 2 cut(s) 324, 438
MseI TTAA 5 cut(s) 291, 335, 558, 693, 883
MslI CAYNNNNRTG 2 cut(s) 267, 285
Msp20I TGGCCA 2 cut(s) 324, 438
MspI CCGG 4 cut(s) 416, 750, 812, 852
MspR9I CCNGG 3 cut(s) 750, 751, 812
NciI CCSGG 3 cut(s) 750, 751, 812
NcoI CCATGG 1 cut(s) 193
NdeII GATC 2 cut(s) 24, 85
NlaIII CATG 7 cut(s) 31, 55, 197, 329, 412, 443, 796
NlaIV GGNNCC 2 cut(s) 414, 518
NmeAIII GCCGAG 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 282
NspI RCATGY 1 cut(s) 796
PagI TCATGA 1 cut(s) 27
PciSI GCTCTTC 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 423
PkrI GCNGC 6 cut(s) 232, 451, 672, 756, 817, 877
PleI GAGTC 1 cut(s) 800
PpsI GAGTC 1 cut(s) 800
PshBI ATTAAT 1 cut(s) 693
Psp1406I AACGTT 1 cut(s) 744
PspN4I GGNNCC 2 cut(s) 414, 518
PspPI GGNCC 1 cut(s) 644
PstI CTGCAG 1 cut(s) 877
RseI CAYNNNNRTG 2 cut(s) 267, 285
SapI GCTCTTC 1 cut(s) 350
SaqAI TTAA 5 cut(s) 291, 335, 558, 693, 883
SatI GCNGC 6 cut(s) 231, 450, 671, 755, 816, 876
Sau3AI GATC 2 cut(s) 24, 85
Sau96I GGNCC 1 cut(s) 644
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 3 cut(s) 750, 751, 812
SfaNI GCATC 3 cut(s) 304, 477, 700
SfcI CTRYAG 2 cut(s) 399, 873
SinI GGWCC 1 cut(s) 644
SmaI CCCGGG 1 cut(s) 751
SmiMI CAYNNNNRTG 2 cut(s) 267, 285
Sse9I AATT 8 cut(s) 56, 382, 471, 555, 690, 694, 704, 778
SsiI CCGC 1 cut(s) 248
SspMI CTAG 2 cut(s) 635, 819
StyD4I CCNGG 3 cut(s) 748, 749, 810
StyI CCWWGG 2 cut(s) 193, 634
TaaI ACNGT 2 cut(s) 400, 521
TaiI ACGT 1 cut(s) 747
TasI AATT 8 cut(s) 56, 382, 471, 555, 690, 694, 704, 778
Tru1I TTAA 5 cut(s) 291, 335, 558, 693, 883
Tru9I TTAA 5 cut(s) 291, 335, 558, 693, 883
TscAI CASTG 1 cut(s) 764
TseI GCWGC 6 cut(s) 230, 449, 670, 754, 815, 875
TspDTI ATGAA 6 cut(s) 17, 44, 68, 85, 251, 675
TspGWI ACGGA 1 cut(s) 177
TspMI CCCGGG 1 cut(s) 749
TspRI CASTG 1 cut(s) 764
VpaK11BI GGWCC 1 cut(s) 644
VspI ATTAAT 1 cut(s) 693
XagI CCTNNNNNAGG 1 cut(s) 651
XapI RAATTY 1 cut(s) 56
XceI RCATGY 1 cut(s) 796
XmaI CCCGGG 1 cut(s) 749
XmaJI CCTAGG 1 cut(s) 634
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 2 cut(s) 635, 819
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.