RchiOBHm_Chr3g0474591

GMC oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003277
Physical Location & Seq
Reverse (-)
20329481 .. 20330326
846 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44019

Sequence Viewer

Length: 753 bp
ATGCCTCAATTACTATTTGTTTATGACATTTTTGGTTCCAGTTTTAACTCAAGTTCAAACTACATCTTTCCTGCTTTAGCCTTAAAAAAGTTAATTTGGATGCAGATATCGATGTTCATACTTGGAGAAGACAAAACAGTTCCTCTTTTGGAAGCATCAAACCTCAGCTTGCGGCACCACCTCCTGAGGCTTACAGCCCGCTTCATCCCCCGGTATGAGAGGTGCACCTGCAATGAATGTGAAGTTTTTTCCGGCATGTTCGGAAATACCTTCTGGCACGAAAATATTACCCCCACCATGCATCAGTGGTTGAACAAGCAAAGCTCAACAAGGCTTCCTATGTCGGCATTTCCCCACCTCAGGAAAATATGCAACTCTGGTTTTATTGTAGACAGCAATGGTTGCAGCTCATACTTGATCCATCCAGAAAGAATGGCACTCCCGACCCTATATATATCAGGCGGCCGATCTCTCCTTGTGACTCCTCAGACTTCTTTCCTAGCTCATAAATATATGAAGCTGCACCAGCCTGGCTTTAGACATGAAAGGGTGGTTGTGGAGGGTTTCGGGCATTCAGATCTATTGATTGGAGAGGAGTCTCATAAGAAGGTGTTTCCTCACATTTTATCCCATATTAGATTAGCTGAACAAGGAGAGATTCATACCAAGAGAAACCAGTGCAGTAAAGAGGCATTGGATTGGGAAGCTGATCAGCTCTATGACGGCAGCTTTGGACAATGTGGAACTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GMC_oxred_C GMC_oxred_N

Protein Analysis

250

Amino Acids

28.62

Weight (kDa)

8.12

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 174
AccI GTMKAC 1 cut(s) 390
AciI CCGC 3 cut(s) 172, 199, 462
AclWI GGATC 1 cut(s) 412
AcoI YGGCCR 1 cut(s) 463
AfiI CCNNNNNNNGG 1 cut(s) 360
AgsI TTSAA 2 cut(s) 57, 313
AjnI CCWGG 1 cut(s) 529
AluBI AGCT 9 cut(s) 168, 324, 408, 503, 520, 644, 707, 715, 729
AluI AGCT 9 cut(s) 168, 324, 408, 503, 520, 644, 707, 715, 729
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 603
Alw44I GTGCAC 1 cut(s) 223
AlwI GGATC 1 cut(s) 412
AoxI GGCC 1 cut(s) 463
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 3 cut(s) 405, 520, 726
ArsI GACNNNNNNTTYG 2 cut(s) 713, 745
AsuC2I CCSGG 1 cut(s) 211
AxyI CCTNAGG 2 cut(s) 185, 359
BaeGI GKGCMC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 227
BbvCI CCTCAGC 1 cut(s) 164
BbvI GCAGC 3 cut(s) 417, 507, 738
BccI CCATC 1 cut(s) 429
BceAI ACGGC 1 cut(s) 739
BciT130I CCWGG 1 cut(s) 531
BclI TGATCA 1 cut(s) 709
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 603
BfaI CTAG 1 cut(s) 500
BfuAI ACCTGC 1 cut(s) 236
BglII AGATCT 1 cut(s) 577
BisI GCNGC 5 cut(s) 173, 406, 463, 521, 727
BlsI GCNGC 5 cut(s) 174, 407, 464, 522, 728
Bme1390I CCNGG 2 cut(s) 211, 531
BmiI GGNNCC 2 cut(s) 37, 176
BmrFI CCNGG 2 cut(s) 211, 531
BmsI GCATC 3 cut(s) 90, 164, 310
BpiI GAAGAC 1 cut(s) 135
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 211
Bsa29I ATCGAT 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse1I ACTGG 2 cut(s) 39, 676
Bse21I CCTNAGG 2 cut(s) 185, 359
Bse3DI GCAATG 2 cut(s) 238, 403
BseBI CCWGG 1 cut(s) 531
BseCI ATCGAT 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 3 cut(s) 105, 204, 421
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMI GCAATG 2 cut(s) 238, 403
BseMII CTCAG 4 cut(s) 176, 178, 373, 500
BseNI ACTGG 2 cut(s) 39, 676
BseRI GAGGAG 2 cut(s) 474, 608
BseSI GKGCMC 1 cut(s) 227
BseX3I CGGCCG 1 cut(s) 463
BseXI GCAGC 3 cut(s) 417, 507, 738
BsgI GTGCAG 2 cut(s) 506, 700
Bsh1285I CGRYCG 1 cut(s) 466
BshFI GGCC 1 cut(s) 465
BshNI GGYRCC 1 cut(s) 174
BshVI ATCGAT 1 cut(s) 110
BsiEI CGRYCG 1 cut(s) 466
BsiHKAI GWGCWC 1 cut(s) 227
BsiSI CCGG 2 cut(s) 211, 252
BslI CCNNNNNNNGG 1 cut(s) 360
BsmAI GTCTC 1 cut(s) 603
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 4 cut(s) 417, 467, 577, 709
BspACI CCGC 3 cut(s) 172, 199, 462
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 4 cut(s) 177, 177, 372, 499
BspDI ATCGAT 1 cut(s) 110
BspLI GGNNCC 2 cut(s) 37, 176
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 1 cut(s) 412
BspT107I GGYRCC 1 cut(s) 174
BsrDI GCAATG 2 cut(s) 238, 403
BsrI ACTGG 2 cut(s) 39, 676
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 4 cut(s) 417, 467, 577, 709
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 1 cut(s) 139
BstAPI GCANNNNNTGC 1 cut(s) 402
BstC8I GCNNGC 2 cut(s) 170, 199
BstDEI CTNAG 4 cut(s) 164, 185, 359, 486
BstF5I GGATG 3 cut(s) 105, 204, 421
BstKTI GATC 4 cut(s) 420, 470, 580, 712
BstMAI GTCTC 1 cut(s) 603
BstMBI GATC 4 cut(s) 417, 467, 577, 709
BstMCI CGRYCG 1 cut(s) 466
BstMWI GCNNNNNNNGC 2 cut(s) 402, 526
BstNI CCWGG 1 cut(s) 531
BstNSI RCATGY 1 cut(s) 259
BstSCI CCNGG 2 cut(s) 209, 529
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 3 cut(s) 417, 507, 738
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BstZI CGGCCG 1 cut(s) 463
Bsu15I ATCGAT 1 cut(s) 110
Bsu36I CCTNAGG 2 cut(s) 185, 359
BsuRI GGCC 1 cut(s) 465
BsuTUI ATCGAT 1 cut(s) 110
BtsCI GGATG 3 cut(s) 105, 204, 421
BtsIMutI CAGTG 2 cut(s) 311, 683
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 2 cut(s) 170, 199
ClaI ATCGAT 1 cut(s) 110
CviAII CATG 3 cut(s) 256, 298, 542
DdeI CTNAG 4 cut(s) 164, 185, 359, 486
DpnI GATC 4 cut(s) 419, 469, 579, 711
DpnII GATC 4 cut(s) 417, 467, 577, 709
EaeI YGGCCR 1 cut(s) 463
EagI CGGCCG 1 cut(s) 463
EclXI CGGCCG 1 cut(s) 463
Eco32I GATATC 1 cut(s) 108
Eco52I CGGCCG 1 cut(s) 463
Eco81I CCTNAGG 2 cut(s) 185, 359
EcoRII CCWGG 1 cut(s) 529
EcoRV GATATC 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 303
FaeI CATG 3 cut(s) 259, 301, 545
FatI CATG 3 cut(s) 255, 297, 541
FauI CCCGC 1 cut(s) 206
FbaI TGATCA 1 cut(s) 709
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 5 cut(s) 173, 406, 463, 521, 727
FokI GGATG 3 cut(s) 112, 191, 408
Fsp4HI GCNGC 5 cut(s) 173, 406, 463, 521, 727
FspBI CTAG 1 cut(s) 500
GluI GCNGC 5 cut(s) 173, 406, 463, 521, 727
HaeIII GGCC 1 cut(s) 465
HapII CCGG 2 cut(s) 211, 252
Hin1II CATG 3 cut(s) 259, 301, 545
HinfI GANTC 3 cut(s) 481, 596, 658
HpaII CCGG 2 cut(s) 211, 252
Hpy166II GTNNAC 2 cut(s) 225, 391
Hpy188I TCNGA 3 cut(s) 263, 489, 577
Hpy188III TCNNGA 4 cut(s) 184, 361, 425, 442
Hpy8I GTNNAC 2 cut(s) 225, 391
HpyAV CCTTC 2 cut(s) 280, 601
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 8 cut(s) 103, 225, 231, 301, 372, 405, 523, 681
HpyF10VI GCNNNNNNNGC 2 cut(s) 402, 526
HpyF3I CTNAG 4 cut(s) 164, 185, 359, 486
Hsp92II CATG 3 cut(s) 259, 301, 545
Ksp22I TGATCA 1 cut(s) 709
Kzo9I GATC 4 cut(s) 417, 467, 577, 709
Lsp1109I GCAGC 3 cut(s) 417, 507, 738
LweI GCATC 3 cut(s) 90, 164, 310
MaeI CTAG 1 cut(s) 500
MaeIII GTNAC 1 cut(s) 478
MalI GATC 4 cut(s) 419, 469, 579, 711
MboI GATC 4 cut(s) 417, 467, 577, 709
MboII GAAGA 1 cut(s) 140
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 2 cut(s) 8, 93
MlyI GAGTC 2 cut(s) 475, 605
Mph1103I ATGCAT 1 cut(s) 303
MseI TTAA 4 cut(s) 45, 83, 92, 751
MspI CCGG 2 cut(s) 211, 252
MspR9I CCNGG 2 cut(s) 211, 531
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 1 cut(s) 531
MwoI GCNNNNNNNGC 2 cut(s) 402, 526
NciI CCSGG 1 cut(s) 211
NdeII GATC 4 cut(s) 417, 467, 577, 709
NlaIII CATG 3 cut(s) 259, 301, 545
NlaIV GGNNCC 2 cut(s) 37, 176
NmuCI GTSAC 1 cut(s) 478
NsiI ATGCAT 1 cut(s) 303
NspI RCATGY 1 cut(s) 259
PaqCI CACCTGC 1 cut(s) 236
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 1 cut(s) 658
PkrI GCNGC 5 cut(s) 174, 407, 464, 522, 728
PleI GAGTC 2 cut(s) 475, 604
PpsI GAGTC 2 cut(s) 475, 604
Psp6I CCWGG 1 cut(s) 529
PspGI CCWGG 1 cut(s) 529
PspN4I GGNNCC 2 cut(s) 37, 176
PsuI RGATCY 1 cut(s) 577
SaqAI TTAA 4 cut(s) 45, 83, 92, 751
SatI GCNGC 5 cut(s) 173, 406, 463, 521, 727
Sau3AI GATC 4 cut(s) 417, 467, 577, 709
SchI GAGTC 2 cut(s) 475, 605
ScrFI CCNGG 2 cut(s) 211, 531
SduI GDGCHC 1 cut(s) 227
SfaNI GCATC 3 cut(s) 90, 164, 310
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 2 cut(s) 8, 93
SsiI CCGC 3 cut(s) 172, 199, 462
SspI AATATT 1 cut(s) 286
SspMI CTAG 1 cut(s) 500
StyD4I CCNGG 2 cut(s) 209, 529
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 110
TasI AATT 2 cut(s) 8, 93
TauI GCSGC 2 cut(s) 175, 465
TfiI GAWTC 1 cut(s) 658
Tru1I TTAA 4 cut(s) 45, 83, 92, 751
Tru9I TTAA 4 cut(s) 45, 83, 92, 751
TscAI CASTG 2 cut(s) 311, 683
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 3 cut(s) 405, 520, 726
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 6 cut(s) 106, 193, 249, 530, 558, 650
TspRI CASTG 2 cut(s) 311, 683
VneI GTGCAC 1 cut(s) 223
XceI RCATGY 1 cut(s) 259
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 1 cut(s) 500
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.