Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003277

Physical Location & Seq

Genomic Coordinates Forward (+)

29603411 .. 29609830

Gene Structure 6420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2895 bp

ATGGAGAAGCAAGCAGCTGTCGAAGGAAGTTTTGGTTATGGACAAGAAGATAGTTATGATGCTGTTGTTGTGGGTTCTGGATATGGCGGTTCTGTTGCTGCCTGCCGCTTGTCTATGGCAGGCATAAGAGTATGTCTGATTGAGAAGGGCCGGAAATGGGAATCTCAGGATTTTCCAACTGACGTCCCCAAAATCCTGCCGGCTTTTAGGATGGAGAACCAGAACTTAGGCTTTAGCTTTGGACCAAAGGATGCTTTGTTCCAGGTATACGAGCAAAACAATTCTCTAGCAGCAGTGGCTTGTGGGCTTGGTGGAGGTTCACTAGTTAATGCAGGAGTTATGATATCAACACCAGTCCGTGCTAGACGGCATCCAAAATGGCCAAAGGAATGGGAAAGGAATTGGGATAATTGTGAAGCTTCTGCAGCAGCCATGCTGAAAATACAAAGCATACCTGTCAAGTTTCCCTCTGCGAAAATCTTGGAAGAAGTTGCATATGGAGAGCTTGGAGAAACTTTCGAGATGTCAGTTAAGCTGAGTGTGAATTTTGATATTGAAGAACCAATAACCAAGGGAATGAAGTCTCCACAGATGAGTAGCTGCTTAGCCTGTGGGAACTGTCTCTCTGGATGTCCTTACAATGCCAAAAGTTCTACAGACAAAAATTATATACTTTCAGCAATCCAGGGAGGATGCATTGTTAAAACAGAATGTCAAGTGAAGTATGTAGTGAGGAACATGTATGAAAATTTCCCATGTGAAGGCAAAATTGGCAGGAAAAATAGAAGATGGTGTGTTTACTTTAATGAGATTGACTATATAACCTCTGATTTTGTAATCCTATCAGCTGGAGTTTTTGGGACAACTGAGATACTCTTCCAATCACAGATGAGAGGACTGAAACTTTCAGAAGCACTTGGGTCTGGATTCAGCTGTAATGGGAATACTGTGGCTTATCTTGCTGGAAGTCCAGCACCATTGGGTGCTTATGGATTAGACAGAAAGCAAGTGTTTAAGACTCCTTTCGAGGAAAGGCCAGGGCCATCCATCTCTTCATCTTACACCTCTTCACTGGGATTTACAATCCAGAGTGCCGTACTTCCGACAGCTTATCCATACCTGCTGTTTAAAGGGATTACAACGTATGGGTGGCCTGCTGGATACTGGTTCTTTCATGGGATTATAGACAAGATAAAACATATTATAGGTTTCAAGGCATGCCAAGCAATGGTCCTTATTGCACTGGGACATGATGAGAGTGATGGTAAGATTACACTAGAAAAGGGAACAAACAAAATCTGCTTCACTCCACCTCATGATCCCCTTCTCCCAAGAAAAATTAAAGCTTTTCAAAAGCTGACTAAGAAATTAGGAGGAATTCTCTTTATGGCAAAATACCGAAGTGCATCAGTTCATCATTTAGGAGGGTGCAATGCATCATCAGATCCTTCACATGGTGTTTGCAACCCTGATGGGCAGGTTTTTGACCCAAAGTCACCTGCCACAGTGCATCCCGGCCTGTATGTATGTGATGCTTCTTTGATTCCATGTTCTGTCGGCATAAACCCATCTCTTACTATTGCTACTGCAGCTGAGTATGTAAGTAGGTACCTTGTGCAGGATATTCTCATGTACAAGAACAGAGAAGGCCTTGAATCTGGTATTAAATCTCCTAATCAAGATCCAGAATCCTTCATTGATAGGAAGGCTATTAATCGCCAGAGATCATCGGTCACGGTTAAAGAAACCATGAGAGGTTATATTGGTGGTATGCCATGCACAGCTTATCTCATAATGAAAATGAACTCTCAGGACCAGATGGGTTCTGCTAAATGGAAGTTGGGTAATGGAAAATCTCATCCCCTTCTAAGAGGAAAAGTTGGAGGGCATGTGGAAATGATAGCTATTGAGAAGGACAATTTACATATCATAGATGGGAATGTTAATTTGTGTGCAGTAGATGACAGAACTCCTTACACACAGTATATGCATTATCGCCTTCTTCTAGTGGCTTCTACTGGTTCAAGAGGGAAGAAAGATAATGAACCCTTATCTCTTTCCCGTATATGCTTGGAGGGAAATGACAACACTGCAAGTGACATTTGCAAAAGTCGCAGAGAAAAAAAGGATGAGAAGATGATTTTGAAAGGGGAGCTTAATATTTCCATGACAGAGCTTCTTAAGAGCACTATAAGCTTGGAAGGTAACAATAGAGGAAGGTTCATATGCCTCCTATTGGGGTCTCTCTTAAGAACCTATCTCTTGCAGATACCTCGAGGGAACCATGAGGATGTAGATCTGTCAGTTTATCACAGGAAGTCTTATCCAAGCGGCACTCTTCATGAAATACAAACAGAAGATGGATTCCTTATCAGTTGCAGACAATGGAAGTCCCACCATATTTTGTCAAAACTCAAAGGAGATGAACAACAAAATCCAGTTCTCCTTCTTAATGGATATTCTACTGAGAGTTATTGGCTGCCAACAGAACCCAATGACTTGGTAAGATCTTTACTCGAAGAAGGGCATGATACATGGCTTTTACAACCACGATTGCACCCTCGGAATCCTTCAAACAACTTTACGATTGAGGATGTTGCAAGATTTGATATCCCCGCTGGTAAAACATCTTTTTTCCGGCATGTTCGGAAATACCTTCTGGCACGAAAATATTACCCCCACCATGCATCAGTGGTTGAACAAGCAAAGCTCAACAAGGCTTCCTATGTCGGCATTTCCCCACCTCAGGAAAATATGCAACTCCGGTTTTATTGTAGACAGCAATGGTTGCAGCTCATACTTGATCCATCCAGAAAGAATGGCACTCCCGACCCTATATATATCAGGCGGCCGATCTCTCCTTGTGACTCCTCAGACTTCTTTCCTAGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

964

Amino Acids

107.19

Weight (kDa)

8.78

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMC_oxred_N	PF00732	20 - 295	3.6e-09	GMC oxidoreductase
GMC_oxred_C	PF05199	463 - 531	2.7e-10	GMC oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003277)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19350 FvH4_6g19350 FvH4_6g19350 FvH4_6g19350 FvH4_6g19350 FvH4_6g19352 FvH4_6g19352
malus_domestica	MD10G1176100.v1.1 MD12G1029200.v1.1 MD14G1029500.v1.1
prunus_persica	Prupe.7G102400_v2.0.a1 Prupe.8G215200_v2.0.a1 Prupe.8G215200_v2.0.a1
pyrus_communis	pycom12g02790
rosa_chinensis	RchiOBHm_Chr3g0474591 RchiOBHm_Chr3g0474611 RchiOBHm_Chr3g0474651
rosa_laevigata	RLG00000023905 RLG00000023908 RLG00000023909
rosa_multiflora	Rmu_sc0001353.1_g000038 Rmu_sc0001353.1_g000065
rosa_roxburghii	Rroxscaffold_6G00407010 Rroxscaffold_6G00407050
rosa_rugosa	Rorug03G0141900 Rorug03G0142100
rosa_samantha	Rh3AG192300 Rh3AG192400 Rh3BG222200 Rh3BG222300 Rh3CG216900 Rh3CG217000 Rh3DG217800 Rh3DG217900 Rh3DG218400
rosa_wichuraiana	Rw3G017560 Rw3G017570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1507
AatII	GACGTC	1 cut(s)	186
AbsI	CCTCGAGG	1 cut(s)	2274
Acc36I	ACCTGC	3 cut(s)	1128, 1468, 1507
Acc65I	GGTACC	1 cut(s)	1608
AccB1I	GGYRCC	1 cut(s)	1608
AccB7I	CCANNNNNTGG	1 cut(s)	1228
AccI	GTMKAC	2 cut(s)	267, 2776
AciI	CCGC	5 cut(s)	87, 106, 2331, 2616, 2848
AclWI	GGATC	4 cut(s)	1313, 1439, 1676, 2798
AcoI	YGGCCR	2 cut(s)	380, 2849
AcsI	RAATTY	3 cut(s)	544, 748, 1377
AcyI	GRCGYC	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	1457
AfaI	GTAC	3 cut(s)	1098, 1610, 1634
AfiI	CCNNNNNNNGG	7 cut(s)	157, 761, 1228, 1454, 1618, 2236, 2746
AflII	CTTAAG	2 cut(s)	2180, 2248
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	8 cut(s)	557, 1213, 1352, 1655, 2025, 2146, 2574, 2699
AhdI	GACNNNNNGTC	1 cut(s)	1492
AhlI	ACTAGT	1 cut(s)	322
AjnI	CCWGG	3 cut(s)	261, 684, 1036
AjuI	GAANNNNNNNTTGG	4 cut(s)	15, 47, 753, 785
AloI	GAACNNNNNNTCC	2 cut(s)	242, 274
Alw21I	GWGCWC	1 cut(s)	2189
Alw26I	GTCTC	3 cut(s)	588, 626, 2247
AlwI	GGATC	4 cut(s)	1313, 1439, 1676, 2798
Ama87I	CYCGRG	1 cut(s)	2274
AoxI	GGCC	8 cut(s)	148, 380, 1034, 1040, 1151, 1516, 1648, 2849
ApeKI	GCWGC	9 cut(s)	14, 98, 290, 425, 428, 600, 1589, 2479, 2791
ApoI	RAATTY	3 cut(s)	544, 748, 1377
AseI	ATTAAT	1 cut(s)	1713
Asp718I	GGTACC	1 cut(s)	1608
AspS9I	GGNCC	5 cut(s)	148, 242, 1040, 1231, 1813
AsuC2I	CCSGG	1 cut(s)	1515
AsuHPI	GGTGA	1 cut(s)	1488
AvaI	CYCGRG	1 cut(s)	2274
AvaII	GGWCC	3 cut(s)	242, 1231, 1813
AxyI	CCTNAGG	1 cut(s)	2745
BalI	TGGCCA	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	1608
Bbv12I	GWGCWC	1 cut(s)	2189
BbvI	GCAGC	9 cut(s)	26, 85, 302, 437, 440, 587, 1601, 2466, 2803
BceAI	ACGGC	2 cut(s)	383, 1079
BcgI	CGANNNNNNTGC	2 cut(s)	2255, 2289
BciT130I	CCWGG	3 cut(s)	263, 686, 1038
BciVI	GTATCC	1 cut(s)	1154
BcnI	CCSGG	1 cut(s)	1515
BcoDI	GTCTC	3 cut(s)	588, 626, 2247
BcuI	ACTAGT	1 cut(s)	322
BfaI	CTAG	6 cut(s)	287, 323, 363, 1277, 2006, 2886
BfmI	CTRYAG	3 cut(s)	423, 654, 1587
BfrI	CTTAAG	2 cut(s)	2180, 2248
BfuAI	ACCTGC	3 cut(s)	1128, 1468, 1507
BfuI	GTATCC	1 cut(s)	1154
BglII	AGATCT	2 cut(s)	2296, 2507
BlpI	GCTNAGC	1 cut(s)	604
Bme1390I	CCNGG	4 cut(s)	263, 686, 1038, 1515
Bme18I	GGWCC	3 cut(s)	242, 1231, 1813
BmeRI	GACNNNNNGTC	1 cut(s)	1492
BmeT110I	CYCGRG	1 cut(s)	2274
BmgT120I	GGNCC	5 cut(s)	148, 242, 1040, 1231, 1813
BmiI	GGNNCC	2 cut(s)	1610, 2282
BmrFI	CCNGG	4 cut(s)	263, 686, 1038, 1515
BmrI	ACTGGG	2 cut(s)	1082, 1253
BmsI	GCATC	9 cut(s)	49, 241, 379, 683, 1415, 1445, 1519, 1522, 2696
BmuI	ACTGGG	2 cut(s)	1082, 1253
BplI	GAGNNNNNCTC	2 cut(s)	1365, 1397
BpmI	CTGGAG	1 cut(s)	870
Bpu1102I	GCTNAGC	1 cut(s)	604
BpuMI	CCSGG	1 cut(s)	1515
BsaBI	GATNNNNATC	1 cut(s)	2295
BsaHI	GRCGYC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	2247
BsaJI	CCNNGG	4 cut(s)	570, 685, 1037, 2561
BsaWI	WCCGGW	1 cut(s)	2763
BsaXI	ACNNNNNCTCC	2 cut(s)	1875, 1905
Bsc4I	CCNNNNNNNGG	7 cut(s)	157, 761, 1228, 1454, 1618, 2236, 2746
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	6 cut(s)	353, 1077, 1169, 1248, 2023, 2438
Bse21I	CCTNAGG	1 cut(s)	2745
Bse3DI	GCAATG	3 cut(s)	1233, 1438, 2789
Bse8I	GATNNNNATC	1 cut(s)	2295
BseBI	CCWGG	3 cut(s)	263, 686, 1038
BseDI	CCNNGG	4 cut(s)	570, 685, 1037, 2561
BseJI	GATNNNNATC	1 cut(s)	2295
BseLI	CCNNNNNNNGG	7 cut(s)	157, 761, 1228, 1454, 1618, 2236, 2746
BseMI	GCAATG	3 cut(s)	1233, 1438, 2789
BseMII	CTCAG	8 cut(s)	179, 527, 858, 1584, 1823, 2457, 2759, 2886
BseNI	ACTGG	6 cut(s)	353, 1077, 1169, 1248, 2023, 2438
BseRI	GAGGAG	1 cut(s)	2860
BseX3I	CGGCCG	1 cut(s)	2849
BseXI	GCAGC	9 cut(s)	26, 85, 302, 437, 440, 587, 1601, 2466, 2803
BsgI	GTGCAG	2 cut(s)	1637, 1974
Bsh1285I	CGRYCG	1 cut(s)	2852
BshFI	GGCC	8 cut(s)	150, 382, 1036, 1042, 1153, 1518, 1650, 2851
BshNI	GGYRCC	1 cut(s)	1608
BsiEI	CGRYCG	1 cut(s)	2852
BsiHKAI	GWGCWC	1 cut(s)	2189
BsiHKCI	CYCGRG	1 cut(s)	2274
BsiSI	CCGG	5 cut(s)	151, 200, 1515, 2638, 2764
BslFI	GGGAC	4 cut(s)	170, 874, 1260, 2377
BslI	CCNNNNNNNGG	7 cut(s)	157, 761, 1228, 1454, 1618, 2236, 2746
BsmAI	GTCTC	3 cut(s)	588, 626, 2247
BsmFI	GGGAC	4 cut(s)	170, 874, 1260, 2377
BsnI	GGCC	8 cut(s)	150, 382, 1036, 1042, 1153, 1518, 1650, 2851
Bso31I	GGTCTC	1 cut(s)	2247
BsoBI	CYCGRG	1 cut(s)	2274
Bsp1286I	GDGCHC	1 cut(s)	2189
Bsp1407I	TGTACA	1 cut(s)	1632
Bsp143I	GATC	8 cut(s)	1318, 1444, 1681, 1724, 2296, 2507, 2803, 2853
Bsp1720I	GCTNAGC	1 cut(s)	604
BspACI	CCGC	5 cut(s)	87, 106, 2331, 2616, 2848
BspANI	GGCC	8 cut(s)	150, 382, 1036, 1042, 1153, 1518, 1650, 2851
BspCNI	CTCAG	8 cut(s)	178, 528, 859, 1585, 1822, 2458, 2758, 2885
BspHI	TCATGA	2 cut(s)	1315, 2341
BspLI	GGNNCC	2 cut(s)	1610, 2282
BspMAI	CTGCAG	2 cut(s)	427, 1591
BspMI	ACCTGC	3 cut(s)	1128, 1468, 1507
BspPI	GGATC	4 cut(s)	1313, 1439, 1676, 2798
BspT107I	GGYRCC	1 cut(s)	1608
BspTI	CTTAAG	2 cut(s)	2180, 2248
BspTNI	GGTCTC	1 cut(s)	2247
BsrDI	GCAATG	3 cut(s)	1233, 1438, 2789
BsrFI	RCCGGY	1 cut(s)	199
BsrGI	TGTACA	1 cut(s)	1632
BsrI	ACTGG	6 cut(s)	353, 1077, 1169, 1248, 2023, 2438
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	4 cut(s)	570, 685, 1037, 2561
BssMI	GATC	8 cut(s)	1318, 1444, 1681, 1724, 2296, 2507, 2803, 2853
BssNAI	GTATAC	1 cut(s)	268
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	570
Bst1107I	GTATAC	1 cut(s)	268
Bst2UI	CCWGG	3 cut(s)	263, 686, 1038
Bst4CI	ACNGT	5 cut(s)	620, 949, 1507, 1738, 1983
Bst6I	CTCTTC	4 cut(s)	881, 1057, 1072, 2343
BstACI	GRCGYC	1 cut(s)	183
BstAFI	CTTAAG	2 cut(s)	2180, 2248
BstAPI	GCANNNNNTGC	1 cut(s)	2788
BstAUI	TGTACA	1 cut(s)	1632
BstC8I	GCNNGC	6 cut(s)	12, 103, 121, 201, 1155, 1219
BstENI	CCTNNNNNAGG	1 cut(s)	1616
BstKTI	GATC	8 cut(s)	1321, 1447, 1684, 1727, 2299, 2510, 2806, 2856
BstMAI	GTCTC	3 cut(s)	588, 626, 2247
BstMBI	GATC	8 cut(s)	1318, 1444, 1681, 1724, 2296, 2507, 2803, 2853
BstMCI	CGRYCG	1 cut(s)	2852
BstMWI	GCNNNNNNNGC	9 cut(s)	296, 425, 771, 959, 1223, 1589, 2112, 2193, 2788
BstNI	CCWGG	3 cut(s)	263, 686, 1038
BstNSI	RCATGY	4 cut(s)	742, 1221, 1892, 2645
BstSCI	CCNGG	4 cut(s)	261, 684, 1036, 1513
BstSFI	CTRYAG	3 cut(s)	423, 654, 1587
BstV1I	GCAGC	9 cut(s)	26, 85, 302, 437, 440, 587, 1601, 2466, 2803
BstX2I	RGATCY	4 cut(s)	1444, 1681, 2296, 2507
BstXI	CCANNNNNNTGG	2 cut(s)	390, 2500
BstYI	RGATCY	4 cut(s)	1444, 1681, 2296, 2507
BstZ17I	GTATAC	1 cut(s)	268
BstZI	CGGCCG	1 cut(s)	2849
Bsu36I	CCTNAGG	1 cut(s)	2745
BsuI	GTATCC	1 cut(s)	1154
BsuRI	GGCC	8 cut(s)	150, 382, 1036, 1042, 1153, 1518, 1650, 2851
BtsI	GCAGTG	2 cut(s)	300, 2088
BtsIMutI	CAGTG	6 cut(s)	300, 1070, 1241, 1512, 2088, 2697
BveI	ACCTGC	3 cut(s)	1128, 1468, 1507
Cac8I	GCNNGC	6 cut(s)	12, 103, 121, 201, 1155, 1219
CciI	TCATGA	2 cut(s)	1315, 2341
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	5 cut(s)	148, 242, 1040, 1231, 1813
Csp6I	GTAC	3 cut(s)	1097, 1609, 1633
CviQI	GTAC	3 cut(s)	1097, 1609, 1633
DpnI	GATC	8 cut(s)	1320, 1446, 1683, 1726, 2298, 2509, 2805, 2855
DpnII	GATC	8 cut(s)	1318, 1444, 1681, 1724, 2296, 2507, 2803, 2853
DraI	TTTAAA	1 cut(s)	1129
DraIII	CACNNNGTG	1 cut(s)	1457
DriI	GACNNNNNGTC	1 cut(s)	1492
EaeI	YGGCCR	2 cut(s)	380, 2849
EagI	CGGCCG	1 cut(s)	2849
Eam1104I	CTCTTC	4 cut(s)	881, 1057, 1072, 2343
Eam1105I	GACNNNNNGTC	1 cut(s)	1492
EarI	CTCTTC	4 cut(s)	881, 1057, 1072, 2343
EclXI	CGGCCG	1 cut(s)	2849
Eco130I	CCWWGG	1 cut(s)	570
Eco147I	AGGCCT	1 cut(s)	1650
Eco31I	GGTCTC	1 cut(s)	2247
Eco32I	GATATC	2 cut(s)	345, 2611
Eco47I	GGWCC	3 cut(s)	242, 1231, 1813
Eco52I	CGGCCG	1 cut(s)	2849
Eco81I	CCTNAGG	1 cut(s)	2745
Eco88I	CYCGRG	1 cut(s)	2274
EcoNI	CCTNNNNNAGG	1 cut(s)	1616
EcoRI	GAATTC	1 cut(s)	1377
EcoRII	CCWGG	3 cut(s)	261, 684, 1036
EcoRV	GATATC	2 cut(s)	345, 2611
EcoT14I	CCWWGG	1 cut(s)	570
EcoT22I	ATGCAT	4 cut(s)	698, 1438, 1992, 2689
ErhI	CCWWGG	1 cut(s)	570
FalI	AAGNNNNNCTT	2 cut(s)	2139, 2171
FaqI	GGGAC	4 cut(s)	170, 874, 1260, 2377
FauI	CCCGC	1 cut(s)	2623
FauNDI	CATATG	2 cut(s)	496, 2225
FblI	GTMKAC	2 cut(s)	267, 2776
FspBI	CTAG	6 cut(s)	287, 323, 363, 1277, 2006, 2886
GsuI	CTGGAG	1 cut(s)	870
HaeIII	GGCC	8 cut(s)	150, 382, 1036, 1042, 1153, 1518, 1650, 2851
HapII	CCGG	5 cut(s)	151, 200, 1515, 2638, 2764
Hin1I	GRCGYC	1 cut(s)	183
HindIII	AAGCTT	3 cut(s)	417, 1344, 2194
HinfI	GANTC	9 cut(s)	161, 927, 1018, 1543, 1655, 1688, 2364, 2566, 2867
HpaII	CCGG	5 cut(s)	151, 200, 1515, 2638, 2764
HphI	GGTGA	1 cut(s)	1488
Hpy166II	GTNNAC	4 cut(s)	268, 320, 799, 2777
Hpy188I	TCNGA	8 cut(s)	138, 829, 910, 1104, 1444, 2565, 2649, 2875
Hpy8I	GTNNAC	4 cut(s)	268, 320, 799, 2777
HpyCH4III	ACNGT	5 cut(s)	620, 949, 1507, 1738, 1983
HpyCH4IV	ACGT	2 cut(s)	183, 1142
HpyF10VI	GCNNNNNNNGC	9 cut(s)	296, 425, 771, 959, 1223, 1589, 2112, 2193, 2788
HpySE526I	ACGT	2 cut(s)	183, 1142
Hsp92I	GRCGYC	1 cut(s)	183
KpnI	GGTACC	1 cut(s)	1612
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
Kzo9I	GATC	8 cut(s)	1318, 1444, 1681, 1724, 2296, 2507, 2803, 2853
LmnI	GCTCC	1 cut(s)	2152
Lsp1109I	GCAGC	9 cut(s)	26, 85, 302, 437, 440, 587, 1601, 2466, 2803
LweI	GCATC	9 cut(s)	49, 241, 379, 683, 1415, 1445, 1519, 1522, 2696
MaeI	CTAG	6 cut(s)	287, 323, 363, 1277, 2006, 2886
MaeII	ACGT	2 cut(s)	183, 1142
MaeIII	GTNAC	5 cut(s)	1494, 1732, 2096, 2204, 2864
MalI	GATC	8 cut(s)	1320, 1446, 1683, 1726, 2298, 2509, 2805, 2855
MboI	GATC	8 cut(s)	1318, 1444, 1681, 1724, 2296, 2507, 2803, 2853
MflI	RGATCY	4 cut(s)	1444, 1681, 2296, 2507
MhlI	GDGCHC	1 cut(s)	2189
MlsI	TGGCCA	1 cut(s)	382
MluNI	TGGCCA	1 cut(s)	382
MlyI	GAGTC	2 cut(s)	1012, 2861
MmeI	TCCRAC	3 cut(s)	200, 1127, 1861
Mox20I	TGGCCA	1 cut(s)	382
Mph1103I	ATGCAT	4 cut(s)	698, 1438, 1992, 2689
MroNI	GCCGGC	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	382
MslI	CAYNNNNRTG	1 cut(s)	2289
Msp20I	TGGCCA	1 cut(s)	382
MspA1I	CMGCKG	5 cut(s)	17, 848, 933, 1592, 2618
MspCI	CTTAAG	2 cut(s)	2180, 2248
MspI	CCGG	5 cut(s)	151, 200, 1515, 2638, 2764
MspR9I	CCNGG	4 cut(s)	263, 686, 1038, 1515
MvaI	CCWGG	3 cut(s)	263, 686, 1038
MwoI	GCNNNNNNNGC	9 cut(s)	296, 425, 771, 959, 1223, 1589, 2112, 2193, 2788
NaeI	GCCGGC	1 cut(s)	201
NciI	CCSGG	1 cut(s)	1515
NdeI	CATATG	2 cut(s)	496, 2225
NdeII	GATC	8 cut(s)	1318, 1444, 1681, 1724, 2296, 2507, 2803, 2853
NgoMIV	GCCGGC	1 cut(s)	199
NlaIV	GGNNCC	2 cut(s)	1610, 2282
NmuCI	GTSAC	4 cut(s)	1494, 1732, 2096, 2864
NsiI	ATGCAT	4 cut(s)	698, 1438, 1992, 2689
NspI	RCATGY	4 cut(s)	742, 1221, 1892, 2645
PaeI	GCATGC	1 cut(s)	1221
PaeR7I	CTCGAG	1 cut(s)	2274
PagI	TCATGA	2 cut(s)	1315, 2341
PaqCI	CACCTGC	1 cut(s)	1507
PceI	AGGCCT	1 cut(s)	1650
PciI	ACATGT	1 cut(s)	738
PdiI	GCCGGC	1 cut(s)	201
PfeI	GAWTC	7 cut(s)	161, 927, 1543, 1655, 1688, 2364, 2566
PflMI	CCANNNNNTGG	1 cut(s)	1228
PleI	GAGTC	2 cut(s)	1012, 2861
PpsI	GAGTC	2 cut(s)	1012, 2861
PscI	ACATGT	1 cut(s)	738
PshBI	ATTAAT	1 cut(s)	1713
Psp6I	CCWGG	3 cut(s)	261, 684, 1036
PspGI	CCWGG	3 cut(s)	261, 684, 1036
PspN4I	GGNNCC	2 cut(s)	1610, 2282
PspPI	GGNCC	5 cut(s)	148, 242, 1040, 1231, 1813
PspXI	VCTCGAGB	1 cut(s)	2274
PstI	CTGCAG	2 cut(s)	427, 1591
PsuI	RGATCY	4 cut(s)	1444, 1681, 2296, 2507
PvuII	CAGCTG	4 cut(s)	17, 848, 933, 1592
RsaI	GTAC	3 cut(s)	1098, 1610, 1634
RsaNI	GTAC	3 cut(s)	1097, 1609, 1633
RseI	CAYNNNNRTG	1 cut(s)	2289
Sau3AI	GATC	8 cut(s)	1318, 1444, 1681, 1724, 2296, 2507, 2803, 2853
Sau96I	GGNCC	5 cut(s)	148, 242, 1040, 1231, 1813
SchI	GAGTC	2 cut(s)	1012, 2861
ScrFI	CCNGG	4 cut(s)	263, 686, 1038, 1515
SduI	GDGCHC	1 cut(s)	2189
SfaNI	GCATC	9 cut(s)	49, 241, 379, 683, 1415, 1445, 1519, 1522, 2696
SfcI	CTRYAG	3 cut(s)	423, 654, 1587
Sfr274I	CTCGAG	1 cut(s)	2274
SinI	GGWCC	3 cut(s)	242, 1231, 1813
SlaI	CTCGAG	1 cut(s)	2274
SmiMI	CAYNNNNRTG	1 cut(s)	2289
SmlI	CTYRAG	3 cut(s)	2180, 2248, 2274
SmoI	CTYRAG	3 cut(s)	2180, 2248, 2274
SpeI	ACTAGT	1 cut(s)	322
SphI	GCATGC	1 cut(s)	1221
SseBI	AGGCCT	1 cut(s)	1650
SsiI	CCGC	5 cut(s)	87, 106, 2331, 2616, 2848
SspI	AATATT	2 cut(s)	2161, 2672
SspMI	CTAG	6 cut(s)	287, 323, 363, 1277, 2006, 2886
StuI	AGGCCT	1 cut(s)	1650
StyD4I	CCNGG	4 cut(s)	261, 684, 1036, 1513
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	5 cut(s)	620, 949, 1507, 1738, 1983
TaiI	ACGT	2 cut(s)	186, 1145
TaqI	TCGA	5 cut(s)	21, 519, 1026, 2275, 2517
TaqII	GACCGA	1 cut(s)	1720
TatI	WGTACW	1 cut(s)	1632
TauI	GCSGC	3 cut(s)	108, 2334, 2851
TfiI	GAWTC	7 cut(s)	161, 927, 1543, 1655, 1688, 2364, 2566
TscAI	CASTG	6 cut(s)	300, 1077, 1248, 1512, 2095, 2697
TseFI	GTSAC	4 cut(s)	1494, 1732, 2096, 2864
TseI	GCWGC	9 cut(s)	14, 98, 290, 425, 428, 600, 1589, 2479, 2791
Tsp45I	GTSAC	4 cut(s)	1494, 1732, 2096, 2864
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	6 cut(s)	300, 1077, 1248, 1512, 2095, 2697
Van91I	CCANNNNNTGG	1 cut(s)	1228
Vha464I	CTTAAG	2 cut(s)	2180, 2248
VpaK11BI	GGWCC	3 cut(s)	242, 1231, 1813
VspI	ATTAAT	1 cut(s)	1713
XagI	CCTNNNNNAGG	1 cut(s)	1616
XapI	RAATTY	3 cut(s)	544, 748, 1377
XceI	RCATGY	4 cut(s)	742, 1221, 1892, 2645
XhoI	CTCGAG	1 cut(s)	2274
XmiI	GTMKAC	2 cut(s)	267, 2776
XspI	CTAG	6 cut(s)	287, 323, 363, 1277, 2006, 2886
ZraI	GACGTC	1 cut(s)	184
Zsp2I	ATGCAT	4 cut(s)	698, 1438, 1992, 2689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.