Rorug03G0142100

GMC oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003277
Physical Location & Seq
Reverse (-)
11682287 .. 11684164
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0142100.1

Sequence Viewer

Length: 1146 bp
ATGGTTTTTTCCTCCATTCCAGCTTATCTTGATCCAGCCAACTGGCAACAGCAACCAAGTCCTCATCATCATCATCATCATCACTTACTATCCGGAAGCAGCAACAACAACAACAGCAACAACATCAACAACTCTCAGCTCCATCCGCTTCCGCCTCCCCCACCACCACCGCCTTCAAATCCTGGCGGTGGTGGCAGCGGGCCTGGAGGTGCGGGCTCGATCAGGCCAGGTTCCATGGCTGATCGAGCCCGCATGGCTAACATCCCCATGCCGGAGCCAGCACTCAAATGCCCTCGCTGCGAGTCCACCAACACCAAGTTCTGCTACTTCAACAACTACAGCCTCACGCAGCCCCGCCACTTCTGCAAGACCTGCCGACGCTACTGGACACGTGGTGGCGCGCTGAGGAACGTTCCCGTGGGAGGCGGCTGCAGGAGAAACAAAAGGAGCAGCAAAGGAGGAAGTAGCCGGTCTAAATCTCCAGTCAGCAGCTCGGACCGTCCCACCGGTTCGGCTAGCTCATCCGGTCAAGCAATTCCCTCCAACAGTTCAACTGGAACTGTCGATATGATAGCAGCTGGGTTGAGCCCTCAAATCCCACCACTGCGTTTCATCAACCCTTTCAATGACCACCACTTCGCAGCTAGCGAGAATCTTGGCCTGAACTACGGCATGAACTACGGCGGCGGCGGAGTAGGAGACTTGGGTTTTCAGATAGGGAGCGGCTTAGGTGGAGGAATTACTAGTACTCCCACCGGGTCGCTTTTTGAGCAGCAATGGAGGTTTCAACAGCAAACGCCGTCGTTTCCTTTCTTGAGTGGAGGTTTGGATCCTTCTCCTGGTTTGTTTGAGGGTAGTGGAGTTGAGTTTCCAGGTTATAATCAGGTGCGGCCGAGGCTACTATCGTCCGGTAGCAGTGTTGGGGTTTCTTCGCAAATGGCTTCGGTGAAGACAGAAGATCCTCACCATCAGAATCATCAGCAACAAGAGATGAACTTGTCTAGACATCTGTTGGGGATCCAAGGAGGGAATGATAGTCAGTACTGGATTAACTCCGGTGGGAATGGGAATGGTACTTCAACAACTGCGTGGACTGATCTTTCTGGGTTTAGCTCTACTTCCACTGCCACCAATCATCCACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GMC_oxred_C GMC_oxred_N

Protein Analysis

381

Amino Acids

40.3

Weight (kDa)

9.36

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 94 - 149 1.5e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
Acc36I ACCTGC 1 cut(s) 380
AccBSI CCGCTC 1 cut(s) 723
AccII CGCG 1 cut(s) 401
AccIII TCCGGA 1 cut(s) 92
AclI AACGTT 1 cut(s) 411
AclWI GGATC 6 cut(s) 26, 824, 837, 953, 1012, 1025
AcoI YGGCCR 1 cut(s) 890
AcvI CACGTG 1 cut(s) 392
AdeI CACNNNGTG 1 cut(s) 395
AfaI GTAC 3 cut(s) 748, 1043, 1075
AfiI CCNNNNNNNGG 4 cut(s) 188, 271, 422, 839
AflIII ACRYGT 1 cut(s) 389
AgeI ACCGGT 1 cut(s) 506
AgsI TTSAA 6 cut(s) 177, 331, 552, 625, 788, 1080
AhlI ACTAGT 1 cut(s) 743
AjnI CCWGG 5 cut(s) 181, 202, 226, 838, 871
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AluBI AGCT 7 cut(s) 23, 139, 492, 519, 578, 644, 1113
AluI AGCT 7 cut(s) 23, 139, 492, 519, 578, 644, 1113
Alw26I GTCTC 1 cut(s) 693
AlwI GGATC 6 cut(s) 26, 824, 837, 953, 1012, 1025
Aor13HI TCCGGA 1 cut(s) 92
AoxI GGCC 4 cut(s) 200, 224, 658, 890
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
AsiGI ACCGGT 1 cut(s) 506
AspLEI GCGC 2 cut(s) 401, 403
AspS9I GGNCC 2 cut(s) 200, 496
AsuC2I CCSGG 1 cut(s) 757
AsuHPI GGTGA 2 cut(s) 956, 958
AsuNHI GCTAGC 2 cut(s) 515, 644
AvaII GGWCC 1 cut(s) 496
BamHI GGATCC 2 cut(s) 829, 1017
BanII GRGCYC 3 cut(s) 218, 250, 590
BbrPI CACGTG 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 956
BbvCI CCTCAGC 1 cut(s) 404
BccI CCATC 2 cut(s) 150, 975
BceAI ACGGC 3 cut(s) 685, 697, 784
BciT130I CCWGG 5 cut(s) 183, 204, 228, 840, 873
BcnI CCSGG 1 cut(s) 757
BcoDI GTCTC 1 cut(s) 693
BcuI ACTAGT 1 cut(s) 743
BfaI CTAG 4 cut(s) 516, 645, 744, 1002
BfmI CTRYAG 2 cut(s) 337, 430
BfuAI ACCTGC 1 cut(s) 380
BglI GCCNNNNNGGC 1 cut(s) 254
BmcAI AGTACT 2 cut(s) 748, 1043
Bme1390I CCNGG 6 cut(s) 183, 204, 228, 757, 840, 873
Bme18I GGWCC 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 200, 496
BmiI GGNNCC 4 cut(s) 232, 276, 831, 1019
BmrFI CCNGG 6 cut(s) 183, 204, 228, 757, 840, 873
BmtI GCTAGC 2 cut(s) 519, 648
BpiI GAAGAC 1 cut(s) 956
BpmI CTGGAG 2 cut(s) 225, 465
Bpu10I CCTNAGC 2 cut(s) 404, 727
BpuEI CTTGAG 1 cut(s) 835
BpuMI CCSGG 1 cut(s) 757
BsaAI YACGTR 1 cut(s) 392
BsaJI CCNNGG 4 cut(s) 234, 417, 893, 1021
BsaWI WCCGGW 5 cut(s) 92, 506, 524, 908, 1055
BsaXI ACNNNNNCTCC 2 cut(s) 733, 763
Bsc4I CCNNNNNNNGG 4 cut(s) 188, 271, 422, 839
Bse118I RCCGGY 2 cut(s) 468, 506
Bse1I ACTGG 5 cut(s) 47, 389, 482, 559, 1049
Bse3DI GCAATG 1 cut(s) 782
BseAI TCCGGA 1 cut(s) 92
BseBI CCWGG 5 cut(s) 183, 204, 228, 840, 873
BseDI CCNNGG 4 cut(s) 234, 417, 893, 1021
BseGI GGATG 4 cut(s) 142, 261, 521, 1135
BseLI CCNNNNNNNGG 4 cut(s) 188, 271, 422, 839
BseMI GCAATG 1 cut(s) 782
BseMII CTCAG 2 cut(s) 149, 395
BseNI ACTGG 5 cut(s) 47, 389, 482, 559, 1049
BsePI GCGCGC 1 cut(s) 399
BseX3I CGGCCG 1 cut(s) 890
BseYI CCCAGC 1 cut(s) 578
Bsh1236I CGCG 1 cut(s) 401
Bsh1285I CGRYCG 1 cut(s) 893
BshFI GGCC 4 cut(s) 202, 226, 660, 892
BshTI ACCGGT 1 cut(s) 506
BsiEI CGRYCG 1 cut(s) 893
BsiSI CCGG 8 cut(s) 93, 272, 469, 507, 525, 756, 909, 1056
BslFI GGGAC 1 cut(s) 486
BslI CCNNNNNNNGG 4 cut(s) 188, 271, 422, 839
BsmAI GTCTC 1 cut(s) 693
BsmFI GGGAC 1 cut(s) 486
BsnI GGCC 4 cut(s) 202, 226, 660, 892
Bsp1286I GDGCHC 3 cut(s) 218, 250, 590
Bsp13I TCCGGA 1 cut(s) 92
Bsp143I GATC 7 cut(s) 31, 219, 241, 829, 958, 1017, 1096
Bsp19I CCATGG 1 cut(s) 234
BspANI GGCC 4 cut(s) 202, 226, 660, 892
BspCNI CTCAG 2 cut(s) 148, 396
BspEI TCCGGA 1 cut(s) 92
BspFNI CGCG 1 cut(s) 401
BspLI GGNNCC 4 cut(s) 232, 276, 831, 1019
BspMAI CTGCAG 1 cut(s) 434
BspMI ACCTGC 1 cut(s) 380
BspOI GCTAGC 2 cut(s) 519, 648
BspPI GGATC 6 cut(s) 26, 824, 837, 953, 1012, 1025
BsrBI CCGCTC 1 cut(s) 723
BsrDI GCAATG 1 cut(s) 782
BsrFI RCCGGY 2 cut(s) 468, 506
BsrI ACTGG 5 cut(s) 47, 389, 482, 559, 1049
BssAI RCCGGY 2 cut(s) 468, 506
BssECI CCNNGG 4 cut(s) 234, 417, 893, 1021
BssHII GCGCGC 1 cut(s) 399
BssMI GATC 7 cut(s) 31, 219, 241, 829, 958, 1017, 1096
BssT1I CCWWGG 2 cut(s) 234, 1021
Bst2UI CCWGG 5 cut(s) 183, 204, 228, 840, 873
Bst4CI ACNGT 3 cut(s) 500, 548, 562
BstAPI GCANNNNNTGC 1 cut(s) 372
BstBAI YACGTR 1 cut(s) 392
BstC8I GCNNGC 7 cut(s) 200, 214, 250, 279, 401, 517, 646
BstDEI CTNAG 3 cut(s) 135, 404, 727
BstDSI CCRYGG 2 cut(s) 234, 417
BstF5I GGATG 4 cut(s) 142, 261, 521, 1135
BstFNI CGCG 1 cut(s) 401
BstHHI GCGC 2 cut(s) 401, 403
BstKTI GATC 7 cut(s) 34, 222, 244, 832, 961, 1020, 1099
BstMAI GTCTC 1 cut(s) 693
BstMBI GATC 7 cut(s) 31, 219, 241, 829, 958, 1017, 1096
BstMCI CGRYCG 1 cut(s) 893
BstMWI GCNNNNNNNGC 9 cut(s) 145, 192, 245, 254, 297, 363, 372, 769, 895
BstNI CCWGG 5 cut(s) 183, 204, 228, 840, 873
BstSCI CCNGG 6 cut(s) 181, 202, 226, 755, 838, 871
BstSFI CTRYAG 2 cut(s) 337, 430
BstUI CGCG 1 cut(s) 401
BstV2I GAAGAC 1 cut(s) 956
BstX2I RGATCY 3 cut(s) 829, 958, 1017
BstXI CCANNNNNNTGG 1 cut(s) 42
BstYI RGATCY 3 cut(s) 829, 958, 1017
BstZI CGGCCG 1 cut(s) 890
BsuRI GGCC 4 cut(s) 202, 226, 660, 892
BtgI CCRYGG 2 cut(s) 234, 417
BtsCI GGATG 4 cut(s) 142, 261, 521, 1135
BtsI GCAGTG 3 cut(s) 602, 922, 1122
BtsIMutI CAGTG 3 cut(s) 602, 922, 1122
BveI ACCTGC 1 cut(s) 380
Cac8I GCNNGC 7 cut(s) 200, 214, 250, 279, 401, 517, 646
CfoI GCGC 2 cut(s) 401, 403
Cfr10I RCCGGY 2 cut(s) 468, 506
Cfr13I GGNCC 2 cut(s) 200, 496
CpoI CGGWCCG 1 cut(s) 496
CseI GACGC 1 cut(s) 387
Csp6I GTAC 3 cut(s) 747, 1042, 1074
CspAI ACCGGT 1 cut(s) 506
CspI CGGWCCG 1 cut(s) 496
CviAII CATG 4 cut(s) 235, 253, 268, 673
CviQI GTAC 3 cut(s) 747, 1042, 1074
DdeI CTNAG 3 cut(s) 135, 404, 727
DpnI GATC 7 cut(s) 33, 221, 243, 831, 960, 1019, 1098
DpnII GATC 7 cut(s) 31, 219, 241, 829, 958, 1017, 1096
DraIII CACNNNGTG 1 cut(s) 395
EaeI YGGCCR 1 cut(s) 890
EagI CGGCCG 1 cut(s) 890
EciI GGCGGA 2 cut(s) 141, 705
EclXI CGGCCG 1 cut(s) 890
Eco130I CCWWGG 2 cut(s) 234, 1021
Eco24I GRGCYC 3 cut(s) 218, 250, 590
Eco47I GGWCC 1 cut(s) 496
Eco52I CGGCCG 1 cut(s) 890
Eco72I CACGTG 1 cut(s) 392
EcoRII CCWGG 5 cut(s) 181, 202, 226, 838, 871
EcoT14I CCWWGG 2 cut(s) 234, 1021
EcoT38I GRGCYC 3 cut(s) 218, 250, 590
ErhI CCWWGG 2 cut(s) 234, 1021
FaeI CATG 4 cut(s) 238, 256, 271, 676
FaiI YATR 7 cut(s) 236, 254, 269, 569, 674, 879, 1144
FaqI GGGAC 1 cut(s) 486
FatI CATG 4 cut(s) 234, 252, 267, 672
FauI CCCGC 4 cut(s) 191, 205, 257, 362
FokI GGATG 4 cut(s) 129, 248, 508, 1122
FriOI GRGCYC 3 cut(s) 218, 250, 590
FspBI CTAG 4 cut(s) 516, 645, 744, 1002
GlaI GCGC 2 cut(s) 400, 402
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 2 cut(s) 225, 465
HaeIII GGCC 4 cut(s) 202, 226, 660, 892
HapII CCGG 8 cut(s) 93, 272, 469, 507, 525, 756, 909, 1056
HgaI GACGC 1 cut(s) 387
HhaI GCGC 2 cut(s) 401, 403
Hin1II CATG 4 cut(s) 238, 256, 271, 676
Hin6I GCGC 2 cut(s) 399, 401
HinP1I GCGC 2 cut(s) 399, 401
HinfI GANTC 3 cut(s) 302, 652, 973
HpaII CCGG 8 cut(s) 93, 272, 469, 507, 525, 756, 909, 1056
HphI GGTGA 2 cut(s) 956, 958
Hpy166II GTNNAC 2 cut(s) 306, 1092
Hpy188I TCNGA 3 cut(s) 496, 714, 972
Hpy188III TCNNGA 4 cut(s) 29, 93, 814, 1002
Hpy8I GTNNAC 2 cut(s) 306, 1092
Hpy99I CGWCG 2 cut(s) 381, 805
HpyAV CCTTC 2 cut(s) 183, 843
HpyCH4III ACNGT 3 cut(s) 500, 548, 562
HpyCH4IV ACGT 2 cut(s) 391, 411
HpyCH4V TGCA 2 cut(s) 366, 432
HpyF10VI GCNNNNNNNGC 9 cut(s) 145, 192, 245, 254, 297, 363, 372, 769, 895
HpyF3I CTNAG 3 cut(s) 135, 404, 727
HpySE526I ACGT 2 cut(s) 391, 411
Hsp92II CATG 4 cut(s) 238, 256, 271, 676
HspAI GCGC 2 cut(s) 399, 401
Kpn2I TCCGGA 1 cut(s) 92
Kzo9I GATC 7 cut(s) 31, 219, 241, 829, 958, 1017, 1096
LmnI GCTCC 4 cut(s) 144, 274, 447, 720
MaeI CTAG 4 cut(s) 516, 645, 744, 1002
MaeII ACGT 2 cut(s) 391, 411
MalI GATC 7 cut(s) 33, 221, 243, 831, 960, 1019, 1098
MbiI CCGCTC 1 cut(s) 723
MboI GATC 7 cut(s) 31, 219, 241, 829, 958, 1017, 1096
MboII GAAGA 3 cut(s) 921, 961, 968
MflI RGATCY 3 cut(s) 829, 958, 1017
MhlI GDGCHC 3 cut(s) 218, 250, 590
MluCI AATT 2 cut(s) 534, 738
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 567
MroI TCCGGA 1 cut(s) 92
MseI TTAA 1 cut(s) 1050
MslI CAYNNNNRTG 2 cut(s) 266, 286
MspA1I CMGCKG 2 cut(s) 198, 578
MspI CCGG 8 cut(s) 93, 272, 469, 507, 525, 756, 909, 1056
MspR9I CCNGG 6 cut(s) 183, 204, 228, 757, 840, 873
MvaI CCWGG 5 cut(s) 183, 204, 228, 840, 873
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 9 cut(s) 145, 192, 245, 254, 297, 363, 372, 769, 895
NciI CCSGG 1 cut(s) 757
NcoI CCATGG 1 cut(s) 234
NdeII GATC 7 cut(s) 31, 219, 241, 829, 958, 1017, 1096
NheI GCTAGC 2 cut(s) 515, 644
NlaIII CATG 4 cut(s) 238, 256, 271, 676
NlaIV GGNNCC 4 cut(s) 232, 276, 831, 1019
NmeAIII GCCGAG 1 cut(s) 918
PauI GCGCGC 1 cut(s) 399
PcsI WCGNNNNNNNCGW 1 cut(s) 645
PfeI GAWTC 2 cut(s) 652, 973
PinAI ACCGGT 1 cut(s) 506
PleI GAGTC 1 cut(s) 310
PmaCI CACGTG 1 cut(s) 392
PmlI CACGTG 1 cut(s) 392
PpsI GAGTC 1 cut(s) 310
Ppu21I YACGTR 1 cut(s) 392
PsiI TTATAA 1 cut(s) 879
Psp1406I AACGTT 1 cut(s) 411
Psp6I CCWGG 5 cut(s) 181, 202, 226, 838, 871
PspCI CACGTG 1 cut(s) 392
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 5 cut(s) 181, 202, 226, 838, 871
PspN4I GGNNCC 4 cut(s) 232, 276, 831, 1019
PspPI GGNCC 2 cut(s) 200, 496
PstI CTGCAG 1 cut(s) 434
PsuI RGATCY 3 cut(s) 829, 958, 1017
PteI GCGCGC 1 cut(s) 399
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 3 cut(s) 748, 1043, 1075
RsaNI GTAC 3 cut(s) 747, 1042, 1074
RseI CAYNNNNRTG 2 cut(s) 266, 286
Rsr2I CGGWCCG 1 cut(s) 496
RsrII CGGWCCG 1 cut(s) 496
SaqAI TTAA 1 cut(s) 1050
Sau3AI GATC 7 cut(s) 31, 219, 241, 829, 958, 1017, 1096
Sau96I GGNCC 2 cut(s) 200, 496
ScaI AGTACT 2 cut(s) 748, 1043
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 6 cut(s) 183, 204, 228, 757, 840, 873
SduI GDGCHC 3 cut(s) 218, 250, 590
SfcI CTRYAG 2 cut(s) 337, 430
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 2 cut(s) 266, 286
SmlI CTYRAG 1 cut(s) 814
SmoI CTYRAG 1 cut(s) 814
SpeI ACTAGT 1 cut(s) 743
Sse9I AATT 2 cut(s) 534, 738
SspMI CTAG 4 cut(s) 516, 645, 744, 1002
StyD4I CCNGG 6 cut(s) 181, 202, 226, 755, 838, 871
StyI CCWWGG 2 cut(s) 234, 1021
TaaI ACNGT 3 cut(s) 500, 548, 562
TaiI ACGT 2 cut(s) 394, 414
TaqI TCGA 3 cut(s) 218, 244, 564
TasI AATT 2 cut(s) 534, 738
TatI WGTACW 2 cut(s) 746, 1041
TauI GCSGC 5 cut(s) 429, 687, 690, 726, 892
TfiI GAWTC 2 cut(s) 652, 973
Tru1I TTAA 1 cut(s) 1050
Tru9I TTAA 1 cut(s) 1050
TscAI CASTG 3 cut(s) 609, 922, 1129
TspDTI ATGAA 3 cut(s) 601, 689, 1007
TspRI CASTG 3 cut(s) 609, 922, 1129
VpaK11BI GGWCC 1 cut(s) 496
XbaI TCTAGA 1 cut(s) 1001
XspI CTAG 4 cut(s) 516, 645, 744, 1002
ZrmI AGTACT 2 cut(s) 748, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.