GMC oxidoreductase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g19350 FvH4_6g19350 FvH4_6g19350 FvH4_6g19350 FvH4_6g19350 FvH4_6g19352 FvH4_6g19352 |
| malus_domestica | MD10G1176100.v1.1 MD12G1029200.v1.1 MD14G1029500.v1.1 |
| prunus_persica | Prupe.7G102400_v2.0.a1 Prupe.8G215200_v2.0.a1 Prupe.8G215200_v2.0.a1 |
| pyrus_communis | pycom12g02790 |
| rosa_chinensis | RchiOBHm_Chr3g0474591 RchiOBHm_Chr3g0474611 RchiOBHm_Chr3g0474651 |
| rosa_laevigata | RLG00000023905 RLG00000023908 RLG00000023909 |
| rosa_multiflora | Rmu_sc0001353.1_g000038 Rmu_sc0001353.1_g000065 |
| rosa_roxburghii | Rroxscaffold_6G00407010 Rroxscaffold_6G00407050 |
| rosa_rugosa | Rorug03G0141900 Rorug03G0142100 |
| rosa_samantha | Rh3AG192300 Rh3AG192400 Rh3BG222200 Rh3BG222300 Rh3CG216900 Rh3CG217000 Rh3DG217800 Rh3DG217900 Rh3DG218400 |
| rosa_wichuraiana | Rw3G017560 Rw3G017570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3419 |
| Acc36I | ACCTGC | 1 cut(s) | 3419 |
| Acc65I | GGTACC | 1 cut(s) | 2312 |
| AccB1I | GGYRCC | 1 cut(s) | 2312 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1454, 1699 |
| AccI | GTMKAC | 2 cut(s) | 727, 3573 |
| AccII | CGCG | 4 cut(s) | 117, 505, 620, 1130 |
| AcoI | YGGCCR | 1 cut(s) | 1037 |
| AcsI | RAATTY | 9 cut(s) | 529, 1134, 1192, 2176, 2275, 2413, 2588, 3007, 3065 |
| AcuI | CTGAAG | 3 cut(s) | 1896, 1905, 2120 |
| AcvI | CACGTG | 2 cut(s) | 455, 2759 |
| AcyI | GRCGYC | 1 cut(s) | 71 |
| AdeI | CACNNNGTG | 1 cut(s) | 3143 |
| AfaI | GTAC | 8 cut(s) | 9, 926, 1569, 1634, 2105, 2314, 3695, 3863 |
| AflII | CTTAAG | 2 cut(s) | 2663, 2731 |
| AflIII | ACRYGT | 2 cut(s) | 1995, 2356 |
| AhlI | ACTAGT | 1 cut(s) | 979 |
| AjnI | CCWGG | 2 cut(s) | 1507, 3712 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1686, 1718, 3897, 3929 |
| AleI | CACNNNNGTG | 1 cut(s) | 3122 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1216, 1248 |
| Alw21I | GWGCWC | 1 cut(s) | 2070 |
| Alw26I | GTCTC | 3 cut(s) | 228, 613, 3193 |
| Ama87I | CYCGRG | 1 cut(s) | 381 |
| AoxI | GGCC | 8 cut(s) | 590, 598, 739, 1037, 1505, 1511, 1622, 1987 |
| ApaI | GGGCCC | 1 cut(s) | 594 |
| ApoI | RAATTY | 9 cut(s) | 529, 1134, 1192, 2176, 2275, 2413, 2588, 3007, 3065 |
| AseI | ATTAAT | 1 cut(s) | 3087 |
| Asp718I | GGTACC | 1 cut(s) | 2312 |
| AspLEI | GCGC | 2 cut(s) | 757, 823 |
| AspS9I | GGNCC | 7 cut(s) | 590, 591, 739, 899, 1511, 2284, 3110 |
| AsuC2I | CCSGG | 2 cut(s) | 1986, 3355 |
| AsuHPI | GGTGA | 4 cut(s) | 2146, 2783, 2894, 3463 |
| AsuII | TTCGAA | 1 cut(s) | 2583 |
| AsuNHI | GCTAGC | 1 cut(s) | 3380 |
| AvaI | CYCGRG | 1 cut(s) | 381 |
| AvaII | GGWCC | 3 cut(s) | 899, 2284, 3110 |
| AxyI | CCTNAGG | 1 cut(s) | 1785 |
| BaeGI | GKGCMC | 1 cut(s) | 594 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3275, 3308 |
| BamHI | GGATCC | 2 cut(s) | 127, 1789 |
| BanI | GGYRCC | 1 cut(s) | 2312 |
| BanII | GRGCYC | 1 cut(s) | 594 |
| BbrPI | CACGTG | 2 cut(s) | 455, 2759 |
| BbsI | GAAGAC | 3 cut(s) | 1902, 2607, 2841 |
| Bbv12I | GWGCWC | 1 cut(s) | 2070 |
| BbvCI | CCTCAGC | 1 cut(s) | 27 |
| BceAI | ACGGC | 1 cut(s) | 39 |
| BciT130I | CCWGG | 2 cut(s) | 1509, 3714 |
| BclI | TGATCA | 1 cut(s) | 3892 |
| BcnI | CCSGG | 2 cut(s) | 1986, 3355 |
| BcoDI | GTCTC | 3 cut(s) | 228, 613, 3193 |
| BcuI | ACTAGT | 1 cut(s) | 979 |
| BfmI | CTRYAG | 4 cut(s) | 284, 1083, 2058, 2847 |
| BfrI | CTTAAG | 2 cut(s) | 2663, 2731 |
| BfuAI | ACCTGC | 1 cut(s) | 3419 |
| BglII | AGATCT | 1 cut(s) | 2795 |
| BlpI | GCTNAGC | 2 cut(s) | 2064, 3154 |
| Bme1390I | CCNGG | 4 cut(s) | 1509, 1986, 3355, 3714 |
| Bme18I | GGWCC | 3 cut(s) | 899, 2284, 3110 |
| BmeT110I | CYCGRG | 1 cut(s) | 381 |
| BmgT120I | GGNCC | 7 cut(s) | 590, 591, 739, 899, 1511, 2284, 3110 |
| BmiI | GGNNCC | 6 cut(s) | 129, 592, 1640, 1681, 1791, 2314 |
| BmrFI | CCNGG | 4 cut(s) | 1509, 1986, 3355, 3714 |
| BmtI | GCTAGC | 1 cut(s) | 3384 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2151 |
| BpiI | GAAGAC | 3 cut(s) | 1902, 2607, 2841 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1836, 1868, 2588, 2620 |
| BpmI | CTGGAG | 2 cut(s) | 1011, 1341 |
| Bpu10I | CCTNAGC | 1 cut(s) | 27 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2064, 3154 |
| Bpu14I | TTCGAA | 1 cut(s) | 2583 |
| BpuEI | CTTGAG | 1 cut(s) | 2489 |
| BpuMI | CCSGG | 2 cut(s) | 1986, 3355 |
| Bsa29I | ATCGAT | 1 cut(s) | 427 |
| BsaAI | YACGTR | 3 cut(s) | 455, 1996, 2759 |
| BsaBI | GATNNNNATC | 1 cut(s) | 190 |
| BsaHI | GRCGYC | 1 cut(s) | 71 |
| BsaI | GGTCTC | 1 cut(s) | 613 |
| BsaWI | WCCGGW | 4 cut(s) | 409, 2315, 2899, 3641 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 669, 699, 2187, 2217, 2343, 2373, 3171, 3201 |
| Bse1I | ACTGG | 4 cut(s) | 530, 1640, 2491, 3487 |
| Bse21I | CCTNAGG | 1 cut(s) | 1785 |
| Bse3DI | GCAATG | 3 cut(s) | 1704, 1909, 2122 |
| Bse8I | GATNNNNATC | 1 cut(s) | 190 |
| BseBI | CCWGG | 2 cut(s) | 1509, 3714 |
| BseCI | ATCGAT | 1 cut(s) | 427 |
| BseJI | GATNNNNATC | 1 cut(s) | 190 |
| BseMI | GCAATG | 3 cut(s) | 1704, 1909, 2122 |
| BseNI | ACTGG | 4 cut(s) | 530, 1640, 2491, 3487 |
| BseRI | GAGGAG | 4 cut(s) | 1770, 1773, 2705, 3657 |
| BseSI | GKGCMC | 1 cut(s) | 594 |
| BseYI | CCCAGC | 1 cut(s) | 1628 |
| BsgI | GTGCAG | 1 cut(s) | 2108 |
| Bsh1236I | CGCG | 4 cut(s) | 117, 505, 620, 1130 |
| BshFI | GGCC | 8 cut(s) | 592, 600, 741, 1039, 1507, 1513, 1624, 1989 |
| BshNI | GGYRCC | 1 cut(s) | 2312 |
| BshVI | ATCGAT | 1 cut(s) | 427 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2070 |
| BsiHKCI | CYCGRG | 1 cut(s) | 381 |
| BsiSI | CCGG | 8 cut(s) | 55, 410, 742, 1986, 2316, 2900, 3355, 3642 |
| BslFI | GGGAC | 2 cut(s) | 1731, 3766 |
| BsmAI | GTCTC | 3 cut(s) | 228, 613, 3193 |
| BsmFI | GGGAC | 2 cut(s) | 1731, 3766 |
| BsmI | GAATGC | 3 cut(s) | 991, 1107, 3754 |
| BsnI | GGCC | 8 cut(s) | 592, 600, 741, 1039, 1507, 1513, 1624, 1989 |
| Bso31I | GGTCTC | 1 cut(s) | 613 |
| BsoBI | CYCGRG | 1 cut(s) | 381 |
| Bsp119I | TTCGAA | 1 cut(s) | 2583 |
| Bsp120I | GGGCCC | 1 cut(s) | 590 |
| Bsp1286I | GDGCHC | 2 cut(s) | 594, 2070 |
| Bsp1407I | TGTACA | 1 cut(s) | 7 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2064, 3154 |
| Bsp19I | CCATGG | 2 cut(s) | 1645, 3106 |
| BspANI | GGCC | 8 cut(s) | 592, 600, 741, 1039, 1507, 1513, 1624, 1989 |
| BspDI | ATCGAT | 1 cut(s) | 427 |
| BspFNI | CGCG | 4 cut(s) | 117, 505, 620, 1130 |
| BspLI | GGNNCC | 6 cut(s) | 129, 592, 1640, 1681, 1791, 2314 |
| BspMAI | CTGCAG | 3 cut(s) | 288, 1087, 2062 |
| BspMI | ACCTGC | 1 cut(s) | 3419 |
| BspOI | GCTAGC | 1 cut(s) | 3384 |
| BspT104I | TTCGAA | 1 cut(s) | 2583 |
| BspT107I | GGYRCC | 1 cut(s) | 2312 |
| BspTI | CTTAAG | 2 cut(s) | 2663, 2731 |
| BspTNI | GGTCTC | 1 cut(s) | 613 |
| BsrDI | GCAATG | 3 cut(s) | 1704, 1909, 2122 |
| BsrGI | TGTACA | 1 cut(s) | 7 |
| BsrI | ACTGG | 4 cut(s) | 530, 1640, 2491, 3487 |
| BssNI | GRCGYC | 1 cut(s) | 71 |
| BssT1I | CCWWGG | 6 cut(s) | 558, 883, 1645, 2149, 3106, 3876 |
| Bst2UI | CCWGG | 2 cut(s) | 1509, 3714 |
| Bst4CI | ACNGT | 9 cut(s) | 239, 1420, 1978, 2189, 2451, 3143, 3288, 3422, 3866 |
| Bst6I | CTCTTC | 4 cut(s) | 479, 1352, 1859, 3771 |
| BstACI | GRCGYC | 1 cut(s) | 71 |
| BstAFI | CTTAAG | 2 cut(s) | 2663, 2731 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3585 |
| BstAUI | TGTACA | 1 cut(s) | 7 |
| BstBAI | YACGTR | 3 cut(s) | 455, 1996, 2759 |
| BstBI | TTCGAA | 1 cut(s) | 2583 |
| BstC8I | GCNNGC | 8 cut(s) | 212, 702, 712, 1005, 1443, 1626, 1690, 3382 |
| BstDSI | CCRYGG | 4 cut(s) | 21, 618, 1645, 3106 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 821 |
| BstFNI | CGCG | 4 cut(s) | 117, 505, 620, 1130 |
| BstHHI | GCGC | 2 cut(s) | 757, 823 |
| BstMAI | GTCTC | 3 cut(s) | 228, 613, 3193 |
| BstNI | CCWGG | 2 cut(s) | 1509, 3714 |
| BstNSI | RCATGY | 4 cut(s) | 1093, 2360, 2576, 3131 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2151 |
| BstSCI | CCNGG | 4 cut(s) | 1507, 1984, 3353, 3712 |
| BstSFI | CTRYAG | 4 cut(s) | 284, 1083, 2058, 2847 |
| BstSLI | GKGCMC | 1 cut(s) | 594 |
| BstUI | CGCG | 4 cut(s) | 117, 505, 620, 1130 |
| BstV2I | GAAGAC | 3 cut(s) | 1902, 2607, 2841 |
| BstX2I | RGATCY | 9 cut(s) | 127, 139, 162, 191, 1391, 1789, 1915, 2795, 3093 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 369, 884 |
| BstYI | RGATCY | 9 cut(s) | 127, 139, 162, 191, 1391, 1789, 1915, 2795, 3093 |
| Bsu15I | ATCGAT | 1 cut(s) | 427 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1785 |
| BsuRI | GGCC | 8 cut(s) | 592, 600, 741, 1039, 1507, 1513, 1624, 1989 |
| BsuTUI | ATCGAT | 1 cut(s) | 427 |
| BtgI | CCRYGG | 4 cut(s) | 21, 618, 1645, 3106 |
| BtgZI | GCGATG | 1 cut(s) | 3344 |
| BtsI | GCAGTG | 5 cut(s) | 293, 957, 1719, 2250, 2567 |
| BveI | ACCTGC | 1 cut(s) | 3419 |
| Cac8I | GCNNGC | 8 cut(s) | 212, 702, 712, 1005, 1443, 1626, 1690, 3382 |
| CfoI | GCGC | 2 cut(s) | 757, 823 |
| Cfr13I | GGNCC | 7 cut(s) | 590, 591, 739, 899, 1511, 2284, 3110 |
| Cfr42I | CCGCGG | 1 cut(s) | 621 |
| ClaI | ATCGAT | 1 cut(s) | 427 |
| CseI | GACGC | 3 cut(s) | 60, 499, 1220 |
| Csp6I | GTAC | 8 cut(s) | 8, 925, 1568, 1633, 2104, 2313, 3694, 3862 |
| CviQI | GTAC | 8 cut(s) | 8, 925, 1568, 1633, 2104, 2313, 3694, 3862 |
| DraI | TTTAAA | 1 cut(s) | 1600 |
| DraIII | CACNNNGTG | 1 cut(s) | 3143 |
| EaeI | YGGCCR | 1 cut(s) | 1037 |
| Eam1104I | CTCTTC | 4 cut(s) | 479, 1352, 1859, 3771 |
| EarI | CTCTTC | 4 cut(s) | 479, 1352, 1859, 3771 |
| EciI | GGCGGA | 2 cut(s) | 115, 238 |
| Eco130I | CCWWGG | 6 cut(s) | 558, 883, 1645, 2149, 3106, 3876 |
| Eco24I | GRGCYC | 1 cut(s) | 594 |
| Eco31I | GGTCTC | 1 cut(s) | 613 |
| Eco47I | GGWCC | 3 cut(s) | 899, 2284, 3110 |
| Eco57I | CTGAAG | 3 cut(s) | 1896, 1905, 2120 |
| Eco72I | CACGTG | 2 cut(s) | 455, 2759 |
| Eco81I | CCTNAGG | 1 cut(s) | 1785 |
| Eco88I | CYCGRG | 1 cut(s) | 381 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 821 |
| EcoO109I | RGGNCCY | 1 cut(s) | 591 |
| EcoRI | GAATTC | 2 cut(s) | 2275, 3007 |
| EcoRII | CCWGG | 2 cut(s) | 1507, 3712 |
| EcoT14I | CCWWGG | 6 cut(s) | 558, 883, 1645, 2149, 3106, 3876 |
| EcoT22I | ATGCAT | 1 cut(s) | 2920 |
| EcoT38I | GRGCYC | 1 cut(s) | 594 |
| ErhI | CCWWGG | 6 cut(s) | 558, 883, 1645, 2149, 3106, 3876 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 431, 463, 2622, 2654 |
| FaqI | GGGAC | 2 cut(s) | 1731, 3766 |
| FauI | CCCGC | 4 cut(s) | 78, 99, 263, 1470 |
| FauNDI | CATATG | 2 cut(s) | 1615, 2920 |
| FbaI | TGATCA | 1 cut(s) | 3892 |
| FblI | GTMKAC | 2 cut(s) | 727, 3573 |
| FriOI | GRGCYC | 1 cut(s) | 594 |
| GlaI | GCGC | 2 cut(s) | 756, 822 |
| GsaI | CCCAGC | 1 cut(s) | 1632 |
| GsuI | CTGGAG | 2 cut(s) | 1011, 1341 |
| HaeIII | GGCC | 8 cut(s) | 592, 600, 741, 1039, 1507, 1513, 1624, 1989 |
| HapII | CCGG | 8 cut(s) | 55, 410, 742, 1986, 2316, 2900, 3355, 3642 |
| HgaI | GACGC | 3 cut(s) | 60, 499, 1220 |
| HhaI | GCGC | 2 cut(s) | 757, 823 |
| Hin1I | GRCGYC | 1 cut(s) | 71 |
| Hin6I | GCGC | 2 cut(s) | 755, 821 |
| HinP1I | GCGC | 2 cut(s) | 755, 821 |
| HincII | GTYRAC | 2 cut(s) | 2156, 3495 |
| HindII | GTYRAC | 2 cut(s) | 2156, 3495 |
| HindIII | AAGCTT | 4 cut(s) | 1074, 1181, 1815, 3242 |
| HpaII | CCGG | 8 cut(s) | 55, 410, 742, 1986, 2316, 2900, 3355, 3642 |
| HphI | GGTGA | 4 cut(s) | 2146, 2783, 2894, 3463 |
| HpyCH4III | ACNGT | 9 cut(s) | 239, 1420, 1978, 2189, 2451, 3143, 3288, 3422, 3866 |
| HpyCH4IV | ACGT | 4 cut(s) | 454, 1995, 2409, 2758 |
| HpySE526I | ACGT | 4 cut(s) | 454, 1995, 2409, 2758 |
| Hsp92I | GRCGYC | 1 cut(s) | 71 |
| HspAI | GCGC | 2 cut(s) | 755, 821 |
| KpnI | GGTACC | 1 cut(s) | 2316 |
| Ksp22I | TGATCA | 1 cut(s) | 3892 |
| KspI | CCGCGG | 1 cut(s) | 621 |
| LmnI | GCTCC | 2 cut(s) | 2635, 3356 |
| MaeII | ACGT | 4 cut(s) | 454, 1995, 2409, 2758 |
| MaeIII | GTNAC | 5 cut(s) | 613, 1159, 1291, 2575, 3661 |
| MfeI | CAATTG | 1 cut(s) | 3048 |
| MflI | RGATCY | 9 cut(s) | 127, 139, 162, 191, 1391, 1789, 1915, 2795, 3093 |
| MhlI | GDGCHC | 2 cut(s) | 594, 2070 |
| MlyI | GAGTC | 4 cut(s) | 1958, 2597, 3658, 3788 |
| MmeI | TCCRAC | 4 cut(s) | 2329, 3040, 3127, 3579 |
| Mph1103I | ATGCAT | 1 cut(s) | 2920 |
| MslI | CAYNNNNRTG | 3 cut(s) | 367, 1618, 3122 |
| MspA1I | CMGCKG | 5 cut(s) | 620, 1319, 1404, 2063, 3995 |
| MspCI | CTTAAG | 2 cut(s) | 2663, 2731 |
| MspI | CCGG | 8 cut(s) | 55, 410, 742, 1986, 2316, 2900, 3355, 3642 |
| MspR9I | CCNGG | 4 cut(s) | 1509, 1986, 3355, 3714 |
| MunI | CAATTG | 1 cut(s) | 3048 |
| Mva1269I | GAATGC | 3 cut(s) | 991, 1107, 3754 |
| MvaI | CCWGG | 2 cut(s) | 1509, 3714 |
| MvnI | CGCG | 4 cut(s) | 117, 505, 620, 1130 |
| NciI | CCSGG | 2 cut(s) | 1986, 3355 |
| NcoI | CCATGG | 2 cut(s) | 1645, 3106 |
| NdeI | CATATG | 2 cut(s) | 1615, 2920 |
| NheI | GCTAGC | 1 cut(s) | 3380 |
| NlaIV | GGNNCC | 6 cut(s) | 129, 592, 1640, 1681, 1791, 2314 |
| NmuCI | GTSAC | 2 cut(s) | 1291, 3661 |
| NsiI | ATGCAT | 1 cut(s) | 2920 |
| NspI | RCATGY | 4 cut(s) | 1093, 2360, 2576, 3131 |
| NspV | TTCGAA | 1 cut(s) | 2583 |
| OliI | CACNNNNGTG | 1 cut(s) | 3122 |
| PaqCI | CACCTGC | 1 cut(s) | 3419 |
| PciI | ACATGT | 1 cut(s) | 2356 |
| PctI | GAATGC | 3 cut(s) | 991, 1107, 3754 |
| PfeI | GAWTC | 9 cut(s) | 938, 1398, 1605, 2524, 2764, 2841, 2896, 3028, 3841 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1454, 1699 |
| PleI | GAGTC | 4 cut(s) | 1958, 2597, 3658, 3787 |
| PmaCI | CACGTG | 2 cut(s) | 455, 2759 |
| PmlI | CACGTG | 2 cut(s) | 455, 2759 |
| PpsI | GAGTC | 4 cut(s) | 1958, 2597, 3658, 3787 |
| Ppu21I | YACGTR | 3 cut(s) | 455, 1996, 2759 |
| PscI | ACATGT | 1 cut(s) | 2356 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2151 |
| PshBI | ATTAAT | 1 cut(s) | 3087 |
| Psp6I | CCWGG | 2 cut(s) | 1507, 3712 |
| PspCI | CACGTG | 2 cut(s) | 455, 2759 |
| PspFI | CCCAGC | 1 cut(s) | 1628 |
| PspGI | CCWGG | 2 cut(s) | 1507, 3712 |
| PspN4I | GGNNCC | 6 cut(s) | 129, 592, 1640, 1681, 1791, 2314 |
| PspOMI | GGGCCC | 1 cut(s) | 590 |
| PspPI | GGNCC | 7 cut(s) | 590, 591, 739, 899, 1511, 2284, 3110 |
| PstI | CTGCAG | 3 cut(s) | 288, 1087, 2062 |
| PsuI | RGATCY | 9 cut(s) | 127, 139, 162, 191, 1391, 1789, 1915, 2795, 3093 |
| PvuII | CAGCTG | 2 cut(s) | 1404, 2063 |
| RsaI | GTAC | 8 cut(s) | 9, 926, 1569, 1634, 2105, 2314, 3695, 3863 |
| RsaNI | GTAC | 8 cut(s) | 8, 925, 1568, 1633, 2104, 2313, 3694, 3862 |
| RseI | CAYNNNNRTG | 3 cut(s) | 367, 1618, 3122 |
| SacII | CCGCGG | 1 cut(s) | 621 |
| Sau96I | GGNCC | 7 cut(s) | 590, 591, 739, 899, 1511, 2284, 3110 |
| SchI | GAGTC | 4 cut(s) | 1958, 2597, 3658, 3788 |
| ScrFI | CCNGG | 4 cut(s) | 1509, 1986, 3355, 3714 |
| SduI | GDGCHC | 2 cut(s) | 594, 2070 |
| SfcI | CTRYAG | 4 cut(s) | 284, 1083, 2058, 2847 |
| Sfr303I | CCGCGG | 1 cut(s) | 621 |
| SfuI | TTCGAA | 1 cut(s) | 2583 |
| SgrBI | CCGCGG | 1 cut(s) | 621 |
| SinI | GGWCC | 3 cut(s) | 899, 2284, 3110 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 367, 1618, 3122 |
| SmlI | CTYRAG | 3 cut(s) | 2504, 2663, 2731 |
| SmoI | CTYRAG | 3 cut(s) | 2504, 2663, 2731 |
| SpeI | ACTAGT | 1 cut(s) | 979 |
| SspI | AATATT | 2 cut(s) | 3899, 3921 |
| StyD4I | CCNGG | 4 cut(s) | 1507, 1984, 3353, 3712 |
| StyI | CCWWGG | 6 cut(s) | 558, 883, 1645, 2149, 3106, 3876 |
| TaaI | ACNGT | 9 cut(s) | 239, 1420, 1978, 2189, 2451, 3143, 3288, 3422, 3866 |
| TaiI | ACGT | 4 cut(s) | 457, 1998, 2412, 2761 |
| TaqI | TCGA | 6 cut(s) | 77, 427, 2169, 2583, 2648, 2870 |
| TatI | WGTACW | 5 cut(s) | 7, 1567, 2103, 3693, 3861 |
| TauI | GCSGC | 6 cut(s) | 120, 223, 232, 270, 1027, 3998 |
| TfiI | GAWTC | 9 cut(s) | 938, 1398, 1605, 2524, 2764, 2841, 2896, 3028, 3841 |
| TseFI | GTSAC | 2 cut(s) | 1291, 3661 |
| Tsp45I | GTSAC | 2 cut(s) | 1291, 3661 |
| TspGWI | ACGGA | 2 cut(s) | 2853, 3930 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1454, 1699 |
| Vha464I | CTTAAG | 2 cut(s) | 2663, 2731 |
| VpaK11BI | GGWCC | 3 cut(s) | 899, 2284, 3110 |
| VspI | ATTAAT | 1 cut(s) | 3087 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 821 |
| XapI | RAATTY | 9 cut(s) | 529, 1134, 1192, 2176, 2275, 2413, 2588, 3007, 3065 |
| XbaI | TCTAGA | 1 cut(s) | 3011 |
| XceI | RCATGY | 4 cut(s) | 1093, 2360, 2576, 3131 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2547 |
| XmiI | GTMKAC | 2 cut(s) | 727, 3573 |
| Zsp2I | ATGCAT | 1 cut(s) | 2920 |