RchiOBHm_Chr3g0476501

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
22434040 .. 22437886
3847 bp
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UTR
Exon/CDS
Intron
PRQ44192

Sequence Viewer

Length: 210 bp
ATGTTCAAATCCCTTTCCCACAATCTAAAATTTTCCTTGATTTTCAGGTTTAGTTGGTTCCGATTTGGTTTTAACATTGGTGTTTTCTTTCTTGTTGTTGCAGTTTTACTTGATTGGCCACCAAGACAGCCAAGTACGTCTTCCCAAGTAGTTCGAGGCTCGGACTCTCGAGGAAGCTCTCATGTCAGGAGCAAACATTTCCAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

8.02

Weight (kDa)

12.0

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 116
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 1 cut(s) 136
AgsI TTSAA 1 cut(s) 7
AjuI GAANNNNNNNTTGG 2 cut(s) 124, 156
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 29
AvaI CYCGRG 1 cut(s) 168
BalI TGGCCA 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 132
BmeT110I CYCGRG 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 132
BshFI GGCC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 168
BsnI GGCC 1 cut(s) 118
BsoBI CYCGRG 1 cut(s) 168
BspANI GGCC 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 132
BsuRI GGCC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 135
CviAII CATG 1 cut(s) 182
CviJI RGCY 4 cut(s) 118, 130, 159, 177
CviKI_1 RGCY 4 cut(s) 118, 130, 159, 177
CviQI GTAC 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 168
FaeI CATG 1 cut(s) 185
FaiI YATR 2 cut(s) 183, 208
FalI AAGNNNNNCTT 2 cut(s) 124, 156
FatI CATG 1 cut(s) 181
HaeIII GGCC 1 cut(s) 118
Hin1II CATG 1 cut(s) 185
HinfI GANTC 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 62, 163
Hpy188III TCNNGA 3 cut(s) 168, 187, 202
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 101
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 1 cut(s) 185
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 2 cut(s) 31, 172
MaeII ACGT 1 cut(s) 137
MboII GAAGA 1 cut(s) 132
MlsI TGGCCA 1 cut(s) 118
MluCI AATT 1 cut(s) 29
MluNI TGGCCA 1 cut(s) 118
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 2 cut(s) 149, 164
Mox20I TGGCCA 1 cut(s) 118
MscI TGGCCA 1 cut(s) 118
MseI TTAA 1 cut(s) 72
Msp20I TGGCCA 1 cut(s) 118
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 168
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 59
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SaqAI TTAA 1 cut(s) 72
SchI GAGTC 1 cut(s) 158
SetI ASST 3 cut(s) 50, 140, 179
Sfr274I CTCGAG 1 cut(s) 168
SlaI CTCGAG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 1 cut(s) 29
TaiI ACGT 1 cut(s) 140
TaqI TCGA 2 cut(s) 154, 169
TasI AATT 1 cut(s) 29
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
XapI RAATTY 1 cut(s) 29
XhoI CTCGAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.