Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017798

Physical Location & Seq

Genomic Coordinates Reverse (-)

63805401 .. 63808686

Gene Structure 3286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG452400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTTCTTCTCTGACGATTCGTCGAATCGGAAGCAGGTGGATTTGGGGGGACGGAGTACGAAGGAGAGGGATGAAGGATACGGCCGCCAACCGCGTTGCCTTTTACTTGATTTGGCCAAGTACGTCTTCCCCAAGCAGTTCGAGGCTCAGACTCTCGAGGAAGCTCTCATGTCAGAAAGGCTTGCAAGCAAACTCTTATGTGGAGGGAATAGGGAGGAAGCTATGGGGGTTTGTGATCATGAGCCGTCACGCGAGGAAAACAATAGCATACAGACTGTTGTACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

95

Amino Acids

10.79

Weight (kDa)

4.99

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017798)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476501
rosa_multiflora	Rmu_sc0002745.1_g000012
rosa_samantha	Rh1AG042400 Rh1CG111200 Rh2BG452400 Rh3AG161500 Rh4AG165700 Rh5BG244300 Rh6AG127800 Rh6BG123600 Rh6BG186700 Rh6DG109300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	25
Acc36I	ACCTGC	1 cut(s)	25
AccII	CGCG	2 cut(s)	94, 252
AciI	CCGC	2 cut(s)	85, 92
AcoI	YGGCCR	2 cut(s)	82, 114
AfaI	GTAC	3 cut(s)	58, 122, 282
AhdI	GACNNNNNGTC	1 cut(s)	19
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	2 cut(s)	164, 221
AluI	AGCT	2 cut(s)	164, 221
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	82, 114
AvaI	CYCGRG	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	118
BceAI	ACGGC	2 cut(s)	97, 229
BciVI	GTATCC	1 cut(s)	71
BclI	TGATCA	1 cut(s)	235
BfuAI	ACCTGC	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	71
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	118
BseGI	GGATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	161
BseX3I	CGGCCG	1 cut(s)	82
Bsh1236I	CGCG	2 cut(s)	94, 252
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	84, 116
BsiEI	CGRYCG	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	2 cut(s)	84, 116
BsoBI	CYCGRG	1 cut(s)	155
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	2 cut(s)	85, 92
BspANI	GGCC	2 cut(s)	84, 116
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	2 cut(s)	94, 252
BspHI	TCATGA	1 cut(s)	238
BspMI	ACCTGC	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	280
BssMI	GATC	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	277
BstAUI	TGTACA	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	183, 187
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	2 cut(s)	94, 252
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMCI	CGRYCG	1 cut(s)	85
BstUI	CGCG	2 cut(s)	94, 252
BstV2I	GAAGAC	1 cut(s)	118
BstZI	CGGCCG	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	84, 116
BtsCI	GGATG	1 cut(s)	76
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	183, 187
CciI	TCATGA	1 cut(s)	238
Csp6I	GTAC	3 cut(s)	57, 121, 281
CviAII	CATG	2 cut(s)	169, 239
CviJI	RGCY	7 cut(s)	84, 116, 146, 164, 181, 221, 244
CviKI_1	RGCY	7 cut(s)	84, 116, 146, 164, 181, 221, 244
CviQI	GTAC	3 cut(s)	57, 121, 281
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
DriI	GACNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	2 cut(s)	82, 114
EagI	CGGCCG	1 cut(s)	82
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EclXI	CGGCCG	1 cut(s)	82
Eco52I	CGGCCG	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	155
FaeI	CATG	2 cut(s)	172, 242
FaiI	YATR	5 cut(s)	170, 199, 224, 240, 269
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	2 cut(s)	168, 238
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	84, 116
Hin1II	CATG	2 cut(s)	172, 242
HinfI	GANTC	3 cut(s)	17, 25, 151
Hpy188I	TCNGA	4 cut(s)	13, 30, 150, 175
Hpy188III	TCNNGA	2 cut(s)	155, 239
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	55, 68
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	172, 242
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	235
LpnPI	CCDG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	116
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	6 cut(s)	60, 136, 151, 197, 208, 247
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	116
MvnI	CGCG	2 cut(s)	94, 252
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	2 cut(s)	172, 242
NmuCI	GTSAC	1 cut(s)	246
PaeR7I	CTCGAG	1 cut(s)	155
PagI	TCATGA	1 cut(s)	238
PaqCI	CACCTGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	17, 25
PkrI	GCNGC	1 cut(s)	86
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
RsaI	GTAC	3 cut(s)	58, 122, 282
RsaNI	GTAC	3 cut(s)	57, 121, 281
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	145
SetI	ASST	4 cut(s)	39, 126, 166, 223
Sfr274I	CTCGAG	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SsiI	CCGC	2 cut(s)	85, 92
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	23, 141, 156
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	17, 25
TseFI	GTSAC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	1 cut(s)	87
TspGWI	ACGGA	1 cut(s)	67
XhoI	CTCGAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.