Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017798

Physical Location & Seq

Genomic Coordinates Reverse (-)

34343410 .. 34343799

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG186700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGCCGCCGACCGCGCCGTCGTATCTTCTCCACCGCAGCGAAGAAGGACTACGACCGCTCTCGAAGCCCGAATCTCCCTCGTCGTCACCCAAGCCTCCTCCGCCTCCCAGCGACTTTTATTCGATTTGGCCACCGAGACGGCCCAGTACGTCTTCCCTAAGCAGTTCGAGGCTCGGACTCTCGAGGAAGCTCTCATGTCAGGTATTGTTTTGGGTGGATTCCGATTCCGATTCCATCTTGTAATTAACCCTGGGGAATCCCAAATCCCAGTTCCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SOUL

Protein Analysis

93

Amino Acids

10.26

Weight (kDa)

9.93

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017798)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476501
rosa_multiflora	Rmu_sc0002745.1_g000012
rosa_samantha	Rh1AG042400 Rh1CG111200 Rh2BG452400 Rh3AG161500 Rh4AG165700 Rh5BG244300 Rh6AG127800 Rh6BG123600 Rh6BG186700 Rh6DG109300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	59
AccII	CGCG	1 cut(s)	15
AciI	CCGC	5 cut(s)	6, 13, 35, 57, 102
AcoI	YGGCCR	2 cut(s)	3, 129
AfaI	GTAC	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	1 cut(s)	255
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw26I	GTCTC	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	3 cut(s)	3, 129, 141
ApeKI	GCWGC	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	131
BarI	GAAGNNNNNNTAC	2 cut(s)	34, 66
BbsI	GAAGAC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	243
BceAI	ACGGC	2 cut(s)	2, 156
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	131
BisI	GCNGC	2 cut(s)	6, 38
BlsI	GCNGC	2 cut(s)	7, 39
Bme1390I	CCNGG	1 cut(s)	252
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	252
BmrI	ACTGGG	2 cut(s)	139, 263
BmuI	ACTGGG	2 cut(s)	139, 263
BpiI	GAAGAC	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	250, 251
Bse1I	ACTGG	2 cut(s)	145, 269
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	250, 251
BseNI	ACTGG	2 cut(s)	145, 269
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	49
BseYI	CCCAGC	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	15
Bsh1285I	CGRYCG	2 cut(s)	13, 57
BshFI	GGCC	3 cut(s)	5, 131, 143
BsiEI	CGRYCG	2 cut(s)	13, 57
BsiHKCI	CYCGRG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	131
BsmBI	CGTCTC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	5, 131, 143
BsoBI	CYCGRG	1 cut(s)	182
BspACI	CCGC	5 cut(s)	6, 13, 35, 57, 102
BspANI	GGCC	3 cut(s)	5, 131, 143
BspFNI	CGCG	1 cut(s)	15
BsrBI	CCGCTC	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	145, 269
BssECI	CCNNGG	2 cut(s)	250, 251
Bst2UI	CCWGG	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	17
BstMAI	GTCTC	1 cut(s)	131
BstMCI	CGRYCG	2 cut(s)	13, 57
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 65, 101
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	145
BsuRI	GGCC	3 cut(s)	5, 131, 143
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	7 cut(s)	5, 68, 95, 131, 143, 173, 191
CviKI_1	RGCY	7 cut(s)	5, 68, 95, 131, 143, 173, 191
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	159
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	2 cut(s)	3, 129
EciI	GGCGGA	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	1 cut(s)	199
FaiI	YATR	3 cut(s)	197, 278, 280
FatI	CATG	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	6, 38
Fsp4HI	GCNGC	2 cut(s)	6, 38
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	2 cut(s)	6, 38
GsaI	CCCAGC	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	5, 131, 143
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	6 cut(s)	72, 178, 219, 225, 231, 257
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	3 cut(s)	177, 224, 230
Hpy188III	TCNNGA	2 cut(s)	62, 182
Hpy99I	CGWCG	2 cut(s)	23, 86
HpyAV	CCTTC	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 65, 101
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	1 cut(s)	15
LpnPI	CCDG	5 cut(s)	122, 158, 186, 237, 264
Lsp1109I	GCAGC	1 cut(s)	49
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	85
MbiI	CCGCTC	1 cut(s)	59
MboII	GAAGA	3 cut(s)	18, 54, 145
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	1 cut(s)	243
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	6 cut(s)	89, 106, 109, 115, 163, 178
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	14, 65, 101
NlaIII	CATG	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	182
PasI	CCCWGGG	1 cut(s)	251
PfeI	GAWTC	5 cut(s)	72, 219, 225, 231, 257
PkrI	GCNGC	2 cut(s)	7, 39
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	142
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	6, 38
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	3 cut(s)	153, 193, 205
Sfr274I	CTCGAG	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	5 cut(s)	6, 13, 35, 57, 102
StyD4I	CCNGG	1 cut(s)	250
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	4 cut(s)	63, 123, 168, 183
TasI	AATT	1 cut(s)	243
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	5 cut(s)	72, 219, 225, 231, 257
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.