Rh6BG123600

Heme-binding-like protein At3g10130

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017798
Physical Location & Seq
Forward (+)
19317808 .. 19338140
20333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG123600.1

Sequence Viewer

Length: 327 bp
ATGTCTGCTCTCAAAGCCCGAAGCTCCCTCGTCACCGCTCTCGCCACCCAAGCCTCCTCTGTCTCCCAGGAACATAAATTTTTACTCGATTTGGCCAAGTACGTCTTCCCCAAGCAGTTTGAGGCTCAGACTCTCGAGGAAGCTCTCATGTTCTTCTACAGCCAGATCCCTTCCTTAATGAACATACCAGCATGTTTGAGAAAAGCACTGAGAAGGGGTCTGTTTAGGTTACCTTCAAAAGATGTATCTATGGCTATGAGGACTGTTGGTAATGTGGGAGTTCAAATTGTTTGTCTCCCTTTCAATCCCCTCTATGTTTTCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

108

Amino Acids

12.15

Weight (kDa)

9.69

Isoelectric Point (pI)

65.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 38
AciI CCGC 1 cut(s) 36
AclWI GGATC 1 cut(s) 160
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 1 cut(s) 77
AfaI GTAC 1 cut(s) 101
AgsI TTSAA 3 cut(s) 237, 284, 304
AjnI CCWGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 2 cut(s) 24, 143
AluI AGCT 2 cut(s) 24, 143
Alw26I GTCTC 2 cut(s) 67, 299
AlwI GGATC 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 77
ArsI GACNNNNNNTTYG 2 cut(s) 277, 309
AsuHPI GGTGA 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 134
BalI TGGCCA 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 67, 299
BfaI CTAG 1 cut(s) 325
BfmI CTRYAG 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 68
BmeT110I CYCGRG 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 140, 200
BseRI GAGGAG 1 cut(s) 46
BshFI GGCC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 134
BsmAI GTCTC 2 cut(s) 67, 299
BsnI GGCC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 134
Bsp143I GATC 1 cut(s) 165
BspACI CCGC 1 cut(s) 36
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 2 cut(s) 139, 201
BspPI GGATC 1 cut(s) 160
BsrBI CCGCTC 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 265
BstDEI CTNAG 2 cut(s) 126, 209
BstEII GGTNACC 1 cut(s) 228
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 2 cut(s) 67, 299
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 2 cut(s) 14, 50
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 195
BstPI GGTNACC 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 157
BstV2I GAAGAC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 206
Csp6I GTAC 1 cut(s) 100
CviAII CATG 2 cut(s) 148, 192
CviJI RGCY 8 cut(s) 17, 24, 53, 95, 125, 143, 162, 254
CviKI_1 RGCY 8 cut(s) 17, 24, 53, 95, 125, 143, 162, 254
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 2 cut(s) 126, 209
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
EaeI YGGCCR 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 134
Eco91I GGTNACC 1 cut(s) 228
EcoO65I GGTNACC 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 66
FaeI CATG 2 cut(s) 151, 195
FaiI YATR 7 cut(s) 75, 149, 185, 193, 251, 257, 315
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 2 cut(s) 147, 191
FspBI CTAG 1 cut(s) 325
HaeIII GGCC 1 cut(s) 95
Hin1II CATG 2 cut(s) 151, 195
HinfI GANTC 1 cut(s) 130
HphI GGTGA 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 1 cut(s) 134
HpyAV CCTTC 3 cut(s) 180, 207, 243
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 50
HpyF3I CTNAG 2 cut(s) 126, 209
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 2 cut(s) 151, 195
Kzo9I GATC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 4 cut(s) 53, 80, 176, 201
MaeI CTAG 1 cut(s) 325
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 2 cut(s) 31, 228
MalI GATC 1 cut(s) 167
MbiI CCGCTC 1 cut(s) 38
MboI GATC 1 cut(s) 165
MboII GAAGA 2 cut(s) 97, 145
MflI RGATCY 1 cut(s) 165
MlsI TGGCCA 1 cut(s) 95
MluCI AATT 2 cut(s) 77, 285
MluNI TGGCCA 1 cut(s) 95
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 7 cut(s) 38, 64, 67, 115, 130, 252, 320
Mox20I TGGCCA 1 cut(s) 95
MscI TGGCCA 1 cut(s) 95
MseI TTAA 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 14, 50
NdeII GATC 1 cut(s) 165
NlaIII CATG 2 cut(s) 151, 195
NmuCI GTSAC 1 cut(s) 31
NspI RCATGY 1 cut(s) 195
PaeR7I CTCGAG 1 cut(s) 134
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 66
PspEI GGTNACC 1 cut(s) 228
PspGI CCWGG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 165
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 1 cut(s) 165
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 68
SetI ASST 5 cut(s) 26, 105, 145, 230, 235
SfcI CTRYAG 1 cut(s) 157
Sfr274I CTCGAG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 2 cut(s) 77, 285
SsiI CCGC 1 cut(s) 36
SspMI CTAG 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 87, 135
TasI AATT 2 cut(s) 77, 285
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 194
TspRI CASTG 1 cut(s) 213
XapI RAATTY 1 cut(s) 77
XceI RCATGY 1 cut(s) 195
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.