Rh1AG042400

Heme-binding-like protein At3g10130

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
7378282 .. 7378905
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG042400.1

Sequence Viewer

Length: 279 bp
ATGTTCTTCTCCTACGATTCGTCGAATCGGAAGCACGTGGATTTGGGGGGACGGAGCATGAAGGAGAGGTTTAATTGGTTCCGATTTGGTTTTAACATTTGGTGTTTTCTTATTCTTGTTGCAATTTTACTCGATTTGGCCAAGTACGTCTTCCCTAAGCAGTTCGAGGCTCGGACTCTCGAGGAAGCTCTCATGTCAGGGTCTCCTCCTTTGAGTTCTAGTGGTAGTAGTGGTGGCGGTGGCGGTCCTGTGATATTGGAGCTTCCTGTTGGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

92

Amino Acids

10.19

Weight (kDa)

7.91

Isoelectric Point (pI)

67.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 237, 243
AcoI YGGCCR 1 cut(s) 138
AcvI CACGTG 1 cut(s) 37
AfaI GTAC 1 cut(s) 146
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 2 cut(s) 188, 262
AluI AGCT 2 cut(s) 188, 262
Alw26I GTCTC 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 2 cut(s) 138, 271
AspS9I GGNCC 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 245
BalI TGGCCA 1 cut(s) 140
BbrPI CACGTG 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 245
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 142
Bpu10I CCTNAGC 1 cut(s) 156
BsaAI YACGTR 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 195
BshFI GGCC 2 cut(s) 140, 273
BsiHKCI CYCGRG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 2 cut(s) 140, 273
Bso31I GGTCTC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 179
BspACI CCGC 2 cut(s) 237, 243
BspANI GGCC 2 cut(s) 140, 273
BspLI GGNNCC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 207
BstBAI YACGTR 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 140, 273
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 145
CviAII CATG 2 cut(s) 58, 193
CviJI RGCY 5 cut(s) 140, 170, 188, 262, 273
CviKI_1 RGCY 5 cut(s) 140, 170, 188, 262, 273
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 156
EaeI YGGCCR 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 245
Eco72I CACGTG 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 179
FaeI CATG 2 cut(s) 61, 196
FaiI YATR 2 cut(s) 59, 194
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 63
FatI CATG 2 cut(s) 57, 192
FspBI CTAG 1 cut(s) 219
HaeIII GGCC 2 cut(s) 140, 273
Hin1II CATG 2 cut(s) 61, 196
HinfI GANTC 3 cut(s) 17, 25, 175
Hpy188I TCNGA 3 cut(s) 30, 83, 174
Hpy188III TCNNGA 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 55
HpyCH4IV ACGT 2 cut(s) 36, 147
HpyCH4V TGCA 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 2 cut(s) 36, 147
Hsp92II CATG 2 cut(s) 61, 196
LmnI GCTCC 2 cut(s) 54, 259
LpnPI CCDG 2 cut(s) 183, 261
MaeI CTAG 1 cut(s) 219
MaeII ACGT 2 cut(s) 36, 147
MboII GAAGA 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 2 cut(s) 73, 123
MluNI TGGCCA 1 cut(s) 140
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 4 cut(s) 60, 160, 175, 216
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
MseI TTAA 2 cut(s) 72, 93
Msp20I TGGCCA 1 cut(s) 140
NlaIII CATG 2 cut(s) 61, 196
NlaIV GGNNCC 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 179
PfeI GAWTC 2 cut(s) 17, 25
PleI GAGTC 1 cut(s) 169
PmaCI CACGTG 1 cut(s) 37
PmlI CACGTG 1 cut(s) 37
PpsI GAGTC 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 37
PspCI CACGTG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 245
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 2 cut(s) 72, 93
Sau96I GGNCC 1 cut(s) 245
SchI GAGTC 1 cut(s) 169
SetI ASST 5 cut(s) 39, 71, 150, 190, 264
Sfr274I CTCGAG 1 cut(s) 179
SinI GGWCC 1 cut(s) 245
SlaI CTCGAG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 2 cut(s) 73, 123
SsiI CCGC 2 cut(s) 237, 243
SspMI CTAG 1 cut(s) 219
TaiI ACGT 2 cut(s) 39, 150
TaqI TCGA 4 cut(s) 23, 132, 165, 180
TasI AATT 2 cut(s) 73, 123
TfiI GAWTC 2 cut(s) 17, 25
Tru1I TTAA 2 cut(s) 72, 93
Tru9I TTAA 2 cut(s) 72, 93
TspDTI ATGAA 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 245
XhoI CTCGAG 1 cut(s) 179
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.