Rh3AG161500

Heme-binding-like protein At3g10130

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0017798
Physical Location & Seq
Forward (+)
14848697 .. 14851814
3118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG161500.1

Sequence Viewer

Length: 306 bp
ATGAAGGATACGGCCGCCAACCGCGTTGCCGTATCTTCTCCACTGCAGCGAAGGAGGACCATGTCTGCTCTCAAAGCCCGAAGCTCCCTCGTCGCTGCTCTTGCCACCCAGGCCTCCTCCGTCTCCCAAGAGCATAAATTTTTACTTGATTTGGCCAAGTACGTCTTCCCCAAGCAGTTCGAGGCTCAGACTCTCGATGAAGCTCTCATGTCAGATTTGAAGGAACATAGGTTCTGCCATAGGTTCCTTAAAAAGGTTGAACTTGCTAAGTCTGACCTTAGCTTGCTTTCATATGGAATCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

101

Amino Acids

11.34

Weight (kDa)

9.77

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 24
AciI CCGC 2 cut(s) 15, 22
AcoI YGGCCR 2 cut(s) 12, 153
AcsI RAATTY 1 cut(s) 137
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 2 cut(s) 220, 260
AjnI CCWGG 1 cut(s) 108
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 3 cut(s) 84, 203, 282
AluI AGCT 3 cut(s) 84, 203, 282
Alw26I GTCTC 1 cut(s) 127
AoxI GGCC 3 cut(s) 12, 111, 153
ApeKI GCWGC 2 cut(s) 46, 95
ApoI RAATTY 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 57
AvaII GGWCC 1 cut(s) 57
BalI TGGCCA 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 157
BbvI GCAGC 2 cut(s) 58, 82
BceAI ACGGC 2 cut(s) 14, 27
BciT130I CCWGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 127
BfmI CTRYAG 1 cut(s) 44
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 3 cut(s) 15, 47, 96
BlsI GCNGC 3 cut(s) 16, 48, 97
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 157
Bpu10I CCTNAGC 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 106
BseX3I CGGCCG 1 cut(s) 12
BseXI GCAGC 2 cut(s) 58, 82
Bsh1236I CGCG 1 cut(s) 24
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 3 cut(s) 14, 113, 155
BsiEI CGRYCG 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 127
BsmBI CGTCTC 1 cut(s) 127
BsnI GGCC 3 cut(s) 14, 113, 155
BspACI CCGC 2 cut(s) 15, 22
BspANI GGCC 3 cut(s) 14, 113, 155
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 245
BspMAI CTGCAG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 3 cut(s) 186, 267, 278
BstENI CCTNNNNNAGG 1 cut(s) 251
BstFNI CGCG 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 127
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 3 cut(s) 74, 101, 110
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 44
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 58, 82
BstV2I GAAGAC 1 cut(s) 157
BstZI CGGCCG 1 cut(s) 12
BsuRI GGCC 3 cut(s) 14, 113, 155
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 160
CviAII CATG 2 cut(s) 61, 208
CviJI RGCY 8 cut(s) 14, 77, 84, 113, 155, 185, 203, 282
CviKI_1 RGCY 8 cut(s) 14, 77, 84, 113, 155, 185, 203, 282
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 3 cut(s) 186, 267, 278
EaeI YGGCCR 2 cut(s) 12, 153
EagI CGGCCG 1 cut(s) 12
EclXI CGGCCG 1 cut(s) 12
Eco147I AGGCCT 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 57
Eco52I CGGCCG 1 cut(s) 12
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 2 cut(s) 64, 211
FaiI YATR 7 cut(s) 62, 135, 209, 228, 240, 292, 294
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 2 cut(s) 60, 207
FauNDI CATATG 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 15, 47, 96
Fsp4HI GCNGC 3 cut(s) 15, 47, 96
GluI GCNGC 3 cut(s) 15, 47, 96
HaeIII GGCC 3 cut(s) 14, 113, 155
Hin1II CATG 2 cut(s) 64, 211
HinfI GANTC 2 cut(s) 190, 297
Hpy188I TCNGA 3 cut(s) 189, 214, 274
Hpy188III TCNNGA 1 cut(s) 194
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 45, 214
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 101, 110
HpyF3I CTNAG 3 cut(s) 186, 267, 278
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 64, 211
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 2 cut(s) 95, 122
Lsp1109I GCAGC 2 cut(s) 58, 82
MaeII ACGT 1 cut(s) 162
MboII GAAGA 2 cut(s) 27, 157
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 1 cut(s) 137
MluNI TGGCCA 1 cut(s) 155
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 5 cut(s) 48, 98, 124, 127, 175
Mox20I TGGCCA 1 cut(s) 155
MscI TGGCCA 1 cut(s) 155
MseI TTAA 2 cut(s) 249, 304
Msp20I TGGCCA 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 3 cut(s) 74, 101, 110
NdeI CATATG 1 cut(s) 292
NlaIII CATG 2 cut(s) 64, 211
NlaIV GGNNCC 1 cut(s) 245
PceI AGGCCT 1 cut(s) 113
PfeI GAWTC 1 cut(s) 297
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 3 cut(s) 16, 48, 97
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 57
PstI CTGCAG 1 cut(s) 48
PsyI GACNNNGTC 1 cut(s) 61
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SaqAI TTAA 2 cut(s) 249, 304
SatI GCNGC 3 cut(s) 15, 47, 96
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 110
SetI ASST 8 cut(s) 86, 165, 205, 233, 245, 258, 279, 284
SfcI CTRYAG 1 cut(s) 44
SinI GGWCC 1 cut(s) 57
Sse9I AATT 1 cut(s) 137
SseBI AGGCCT 1 cut(s) 113
SsiI CCGC 2 cut(s) 15, 22
StuI AGGCCT 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 108
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 180, 195
TasI AATT 1 cut(s) 137
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 2 cut(s) 249, 304
Tru9I TTAA 2 cut(s) 249, 304
TscAI CASTG 1 cut(s) 48
TseI GCWGC 2 cut(s) 46, 95
TspDTI ATGAA 3 cut(s) 17, 213, 279
TspGWI ACGGA 1 cut(s) 109
TspRI CASTG 1 cut(s) 48
Tth111I GACNNNGTC 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 57
XagI CCTNNNNNAGG 1 cut(s) 251
XapI RAATTY 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.