Rh6AG127800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017798
Physical Location & Seq
Forward (+)
19299928 .. 19329459
29532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG127800.1

Sequence Viewer

Length: 246 bp
ATGCGATCCCAGCTTACCAGGTGTTCAGGAGTGAAGCCCAAAGTGCAATCCCAGCAAATACGTCTTCCCCAAGCAGTTCGAGGCTCGGACTCTCGAGGAAGCTCTCATGTCATGTTCTTCTACAGCCAGGTCCCTTCCTTAATGAACATACCAGCATGTTTGAGAAAATCACTGAGAAGGGGTCTGTTTAGGTTACCTTCAAAAGATATATTTAGAGATGACGGGTACCCATTAAGCCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.21

Weight (kDa)

11.22

Isoelectric Point (pI)

81.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 225
AccB1I GGYRCC 1 cut(s) 225
AfaI GTAC 1 cut(s) 227
AgsI TTSAA 1 cut(s) 201
AjnI CCWGG 2 cut(s) 17, 126
AluBI AGCT 2 cut(s) 13, 102
AluI AGCT 2 cut(s) 13, 102
Ama87I CYCGRG 1 cut(s) 93
Asp718I GGTACC 1 cut(s) 225
AspS9I GGNCC 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 93
AvaII GGWCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 56
BciT130I CCWGG 2 cut(s) 19, 128
BfmI CTRYAG 1 cut(s) 121
Bme1390I CCNGG 2 cut(s) 19, 128
Bme18I GGWCC 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 2 cut(s) 132, 227
BmrFI CCNGG 2 cut(s) 19, 128
BpiI GAAGAC 1 cut(s) 56
BseBI CCWGG 2 cut(s) 19, 128
BseMII CTCAG 1 cut(s) 164
BseYI CCCAGC 2 cut(s) 9, 51
BshNI GGYRCC 1 cut(s) 225
BsiHKCI CYCGRG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 93
Bsp143I GATC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 132, 227
BspT107I GGYRCC 1 cut(s) 225
BssMI GATC 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 19, 128
BstDEI CTNAG 1 cut(s) 173
BstEII GGTNACC 1 cut(s) 192
BstKTI GATC 1 cut(s) 8
BstMBI GATC 1 cut(s) 5
BstMWI GCNNNNNNNGC 3 cut(s) 10, 43, 52
BstNI CCWGG 2 cut(s) 19, 128
BstNSI RCATGY 1 cut(s) 159
BstPI GGTNACC 1 cut(s) 192
BstSCI CCNGG 2 cut(s) 17, 126
BstSFI CTRYAG 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 130
CsiI ACCWGGT 1 cut(s) 17
Csp6I GTAC 1 cut(s) 226
CviAII CATG 3 cut(s) 107, 112, 156
CviJI RGCY 6 cut(s) 13, 37, 84, 102, 126, 237
CviKI_1 RGCY 6 cut(s) 13, 37, 84, 102, 126, 237
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 173
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 130
EcoO65I GGTNACC 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 17, 126
FaeI CATG 3 cut(s) 110, 115, 159
FaiI YATR 5 cut(s) 108, 113, 149, 157, 209
FaqI GGGAC 1 cut(s) 116
FatI CATG 3 cut(s) 106, 111, 155
GsaI CCCAGC 2 cut(s) 13, 55
Hin1II CATG 3 cut(s) 110, 115, 159
HinfI GANTC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 27, 93
HpyAV CCTTC 3 cut(s) 144, 171, 207
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 43, 52
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 3 cut(s) 110, 115, 159
KpnI GGTACC 1 cut(s) 229
Kzo9I GATC 1 cut(s) 5
LpnPI CCDG 8 cut(s) 4, 12, 23, 31, 65, 113, 140, 165
MabI ACCWGGT 1 cut(s) 17
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 192
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MboII GAAGA 2 cut(s) 56, 109
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 2 cut(s) 74, 89
MseI TTAA 2 cut(s) 140, 233
MspR9I CCNGG 2 cut(s) 19, 128
MvaI CCWGG 2 cut(s) 19, 128
MwoI GCNNNNNNNGC 3 cut(s) 10, 43, 52
NdeII GATC 1 cut(s) 5
NlaIII CATG 3 cut(s) 110, 115, 159
NlaIV GGNNCC 2 cut(s) 132, 227
NspI RCATGY 1 cut(s) 159
PaeR7I CTCGAG 1 cut(s) 93
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PpuMI RGGWCCY 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 130
Psp6I CCWGG 2 cut(s) 17, 126
PspEI GGTNACC 1 cut(s) 192
PspFI CCCAGC 2 cut(s) 9, 51
PspGI CCWGG 2 cut(s) 17, 126
PspN4I GGNNCC 2 cut(s) 132, 227
PspPI GGNCC 1 cut(s) 130
PspPPI RGGWCCY 1 cut(s) 130
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 140, 233
Sau3AI GATC 1 cut(s) 5
Sau96I GGNCC 1 cut(s) 130
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 19, 128
SetI ASST 7 cut(s) 15, 23, 64, 104, 132, 194, 199
SexAI ACCWGGT 1 cut(s) 17
SfcI CTRYAG 1 cut(s) 121
Sfr274I CTCGAG 1 cut(s) 93
SinI GGWCC 1 cut(s) 130
SlaI CTCGAG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 17, 126
TaiI ACGT 1 cut(s) 64
TaqI TCGA 2 cut(s) 79, 94
Tru1I TTAA 2 cut(s) 140, 233
Tru9I TTAA 2 cut(s) 140, 233
TscAI CASTG 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 130
XceI RCATGY 1 cut(s) 159
XhoI CTCGAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.