Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0017798

Physical Location & Seq

Genomic Coordinates Forward (+)

22417137 .. 22419238

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG111200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTTCTTCTCCAACGATTCGTCTGATCGGAAGCACGTGGATTTGGGGGGACGCAGTACGAATGAGAGGGATGAAGGATACGGCCGCCAACCGCGCTGCCTTTACTCGATTTGGCCAAGTACGTCTTCCCCAAGCAGTTCGAGGCTCGGACTCTCGAGGAAGCTCTCATGTCAGGTTTCTCTGGATGTCATCGCTATGAAGCTCACCAGCGTCTTGGGCTCCCAACAATACGTTGCAAAATTCGACGTGGGACAAAAGAAACTCTCCGGTACTTTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0012505 GO:0016209 GO:0016491 GO:0016667 GO:0032542 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParBc

Protein Analysis

93

Amino Acids

10.25

Weight (kDa)

9.56

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017798)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476501
rosa_multiflora	Rmu_sc0002745.1_g000012
rosa_samantha	Rh1AG042400 Rh1CG111200 Rh2BG452400 Rh3AG161500 Rh4AG165700 Rh5BG244300 Rh6AG127800 Rh6BG123600 Rh6BG186700 Rh6DG109300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	94
AciI	CCGC	2 cut(s)	85, 92
AcoI	YGGCCR	2 cut(s)	82, 113
AcsI	RAATTY	1 cut(s)	239
AcvI	CACGTG	1 cut(s)	37
AfaI	GTAC	3 cut(s)	58, 121, 271
AjiI	CACGTC	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	2 cut(s)	109, 141
AluBI	AGCT	2 cut(s)	163, 202
AluI	AGCT	2 cut(s)	163, 202
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	2 cut(s)	82, 113
ApeKI	GCWGC	1 cut(s)	96
ApoI	RAATTY	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	221
BbrPI	CACGTG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	280
BfuI	GTATCC	1 cut(s)	71
BisI	GCNGC	2 cut(s)	85, 97
BlsI	GCNGC	2 cut(s)	86, 98
BmeT110I	CYCGRG	1 cut(s)	154
BmgBI	CACGTC	1 cut(s)	247
BmiI	GGNNCC	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	37
BsaWI	WCCGGW	1 cut(s)	266
BseGI	GGATG	2 cut(s)	76, 190
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	94
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	84, 115
BsiEI	CGRYCG	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	2 cut(s)	63, 264
BsmFI	GGGAC	2 cut(s)	63, 264
BsnI	GGCC	2 cut(s)	84, 115
BsoBI	CYCGRG	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	2 cut(s)	85, 92
BspANI	GGCC	2 cut(s)	84, 115
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	220
BssMI	GATC	1 cut(s)	25
BstBAI	YACGTR	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	76, 190
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 216
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	214
BstZI	CGGCCG	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	84, 115
BtgZI	GCGATG	1 cut(s)	175
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	76, 190
CfoI	GCGC	1 cut(s)	96
CseI	GACGC	2 cut(s)	60, 199
Csp6I	GTAC	3 cut(s)	57, 120, 270
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	6 cut(s)	84, 115, 145, 163, 202, 219
CviKI_1	RGCY	6 cut(s)	84, 115, 145, 163, 202, 219
CviQI	GTAC	3 cut(s)	57, 120, 270
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
EaeI	YGGCCR	2 cut(s)	82, 113
EagI	CGGCCG	1 cut(s)	82
EclXI	CGGCCG	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	221
Eco52I	CGGCCG	1 cut(s)	82
Eco72I	CACGTG	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	221
FaeI	CATG	1 cut(s)	171
FaiI	YATR	2 cut(s)	169, 197
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FaqI	GGGAC	2 cut(s)	63, 264
FatI	CATG	1 cut(s)	167
Fnu4HI	GCNGC	2 cut(s)	85, 97
FokI	GGATG	2 cut(s)	83, 197
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	85, 97
FspBI	CTAG	1 cut(s)	280
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	2 cut(s)	85, 97
HaeIII	GGCC	2 cut(s)	84, 115
HapII	CCGG	1 cut(s)	267
HgaI	GACGC	2 cut(s)	60, 199
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	2 cut(s)	17, 150
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	25, 30, 149
Hpy188III	TCNNGA	2 cut(s)	154, 182
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	1 cut(s)	68
HpyCH4IV	ACGT	4 cut(s)	36, 122, 231, 246
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 216
HpySE526I	ACGT	4 cut(s)	36, 122, 231, 246
Hsp92II	CATG	1 cut(s)	171
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	3 cut(s)	158, 167, 220
Lsp1109I	GCAGC	1 cut(s)	83
MaeI	CTAG	1 cut(s)	280
MaeII	ACGT	4 cut(s)	36, 122, 231, 246
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	117
MhlI	GDGCHC	1 cut(s)	221
MlsI	TGGCCA	1 cut(s)	115
MluCI	AATT	1 cut(s)	239
MluNI	TGGCCA	1 cut(s)	115
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	3 cut(s)	60, 135, 150
Mox20I	TGGCCA	1 cut(s)	115
MscI	TGGCCA	1 cut(s)	115
MslI	CAYNNNNRTG	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	115
MspI	CCGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	93, 216
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	1 cut(s)	220
PaeR7I	CTCGAG	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	86, 98
PleI	GAGTC	1 cut(s)	144
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	144
Ppu21I	YACGTR	1 cut(s)	37
PspCI	CACGTG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	220
RsaI	GTAC	3 cut(s)	58, 121, 271
RsaNI	GTAC	3 cut(s)	57, 120, 270
RseI	CAYNNNNRTG	1 cut(s)	194
SatI	GCNGC	2 cut(s)	85, 97
Sau3AI	GATC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	7 cut(s)	39, 125, 165, 177, 204, 234, 249
Sfr274I	CTCGAG	1 cut(s)	154
SlaI	CTCGAG	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	2 cut(s)	85, 92
SspMI	CTAG	1 cut(s)	280
TaiI	ACGT	4 cut(s)	39, 125, 234, 249
TaqI	TCGA	4 cut(s)	107, 140, 155, 243
TasI	AATT	1 cut(s)	239
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	17
TseI	GCWGC	1 cut(s)	96
TspDTI	ATGAA	2 cut(s)	87, 212
XapI	RAATTY	1 cut(s)	239
XhoI	CTCGAG	1 cut(s)	154
XspI	CTAG	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.