RchiOBHm_Chr3g0493811

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
41332509 .. 41335090
2582 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45653

Sequence Viewer

Length: 240 bp
ATGAATAATGTGGGAATGTTAAAAAAGGTCAGTTTTTATTTTTTTTATTCCCTTTCTGCCCTTAAAGGCAGCTCTCTCTCTCTCTCTTCATCTCCTCCACAGAGATACAAACCTCCAGAAGCGGTTCCTTACCGGAGGACCTCGCCCGCCTCGGAGCTTACTACGATCTCTTCATTTTCATCACTGCCGGAGAAGCAGATATCTGCTTCTACAGTAGCGCCTCTGATTTGTTATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.64

Weight (kDa)

9.67

Isoelectric Point (pI)

67.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 122, 147
AluBI AGCT 2 cut(s) 72, 157
AluI AGCT 2 cut(s) 72, 157
ApeKI GCWGC 1 cut(s) 69
Asp700I GAANNNNTTC 1 cut(s) 123
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 138
AvaII GGWCC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 221
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 126
BpmI CTGGAG 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 1 cut(s) 81
BsiSI CCGG 2 cut(s) 133, 188
Bsp143I GATC 1 cut(s) 165
BspACI CCGC 2 cut(s) 122, 147
BspLI GGNNCC 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 2 cut(s) 91, 175
BstC8I GCNNGC 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 1 cut(s) 168
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 81
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 138
CviJI RGCY 2 cut(s) 72, 157
CviKI_1 RGCY 2 cut(s) 72, 157
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
Eam1104I CTCTTC 2 cut(s) 91, 175
EarI CTCTTC 2 cut(s) 91, 175
Eco32I GATATC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 138
EcoRV GATATC 1 cut(s) 201
FaiI YATR 1 cut(s) 238
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 70
GlaI GCGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 70
GsuI CTGGAG 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 221
HapII CCGG 2 cut(s) 133, 188
HhaI GCGC 1 cut(s) 220
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HpaII CCGG 2 cut(s) 133, 188
Hpy188I TCNGA 2 cut(s) 154, 225
Hpy188III TCNNGA 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 129, 146, 201
Lsp1109I GCAGC 1 cut(s) 81
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 2 cut(s) 78, 162
MnlI CCTC 6 cut(s) 105, 123, 129, 151, 160, 231
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 2 cut(s) 20, 63
MspI CCGG 2 cut(s) 133, 188
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 1 cut(s) 165
NlaIV GGNNCC 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 123
PkrI GCNGC 1 cut(s) 71
PpuMI RGGWCCY 1 cut(s) 138
Psp5II RGGWCCY 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 138
PspPPI RGGWCCY 1 cut(s) 138
SaqAI TTAA 2 cut(s) 20, 63
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 138
SetI ASST 5 cut(s) 30, 74, 115, 143, 159
SfcI CTRYAG 1 cut(s) 210
SgeI CNNG 6 cut(s) 128, 145, 154, 158, 163, 200
SinI GGWCC 1 cut(s) 138
SsiI CCGC 2 cut(s) 122, 147
TaaI ACNGT 1 cut(s) 214
Tru1I TTAA 2 cut(s) 20, 63
Tru9I TTAA 2 cut(s) 20, 63
TscAI CASTG 1 cut(s) 189
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 4 cut(s) 17, 78, 162, 168
TspRI CASTG 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.