Rh7CG103800

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015747
Physical Location & Seq
Forward (+)
7830003 .. 7831981
1979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG103800.1

Sequence Viewer

Length: 429 bp
ATGACAGGGATCGAGTTGTTGAGGCACTACTTCCAGAACACTCAAGAGTTCAAGAAAATATATCGAACAAGTCTAAGAGCCAGGAAATTGTTTGACGAGTTACTCAGAGTTAAGAGACAGCAACAACATCGCCATTTAGAACGTGATACTAAGCAACAAAGGATGGTCTCTGATCTTGAAGCAAGAGAACGAGCTCCCTTTGCTCCAGACCCAGCAGCCACAAAAAGAGAAGAAGAGGAGAGAATTTTTAGGAAACTTGCTGAAGAGGTTTCGAGAATACGTCCAATGCATGCGAGTAAAAGGGCGCCTACTGCTTCAGTTCCCAAAAAAGAGAATGGGAGAGTTGGGAAGGAGAGTGTGGGTGACTATATACTACCGAATGCATTGATCTTAATTGTACTTGGGTGGAGCAATGTGATAGCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

142

Amino Acids

16.63

Weight (kDa)

10.22

Isoelectric Point (pI)

57.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 304
AclWI GGATC 1 cut(s) 17
AcsI RAATTY 1 cut(s) 243
AcuI CTGAAG 2 cut(s) 282, 300
AcyI GRCGYC 1 cut(s) 305
AfaI GTAC 1 cut(s) 399
AgsI TTSAA 2 cut(s) 52, 179
AjnI CCWGG 1 cut(s) 80
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 196
Alw26I GTCTC 2 cut(s) 109, 172
AlwI GGATC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 243
AspLEI GCGC 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 374
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 1 cut(s) 227
BccI CCATC 1 cut(s) 157
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BciT130I CCWGG 1 cut(s) 82
BcoDI GTCTC 2 cut(s) 109, 172
BfoI RGCGCY 1 cut(s) 308
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 305
BsaI GGTCTC 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 418
BseBI CCWGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 168
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 118
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 227
BseYI CCCAGC 1 cut(s) 211
BshNI GGYRCC 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 196
BsmAI GTCTC 2 cut(s) 109, 172
BsmI GAATGC 1 cut(s) 385
Bso31I GGTCTC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 3 cut(s) 9, 172, 387
BspCNI CTCAG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 306
BspPI GGATC 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 304
BspTNI GGTCTC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 418
BssMI GATC 3 cut(s) 9, 172, 387
BssNI GRCGYC 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 82
Bst6I CTCTTC 2 cut(s) 228, 258
BstACI GRCGYC 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 3 cut(s) 74, 104, 150
BstF5I GGATG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 3 cut(s) 12, 175, 390
BstMAI GTCTC 2 cut(s) 109, 172
BstMBI GATC 3 cut(s) 9, 172, 387
BstMWI GCNNNNNNNGC 2 cut(s) 200, 311
BstNI CCWGG 1 cut(s) 82
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 227
BtgZI GCGATG 1 cut(s) 113
BtsCI GGATG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 291
CfoI GCGC 1 cut(s) 307
Csp6I GTAC 1 cut(s) 398
CviAII CATG 1 cut(s) 290
CviJI RGCY 3 cut(s) 80, 194, 218
CviKI_1 RGCY 3 cut(s) 80, 194, 218
CviQI GTAC 1 cut(s) 398
DdeI CTNAG 3 cut(s) 74, 104, 150
DinI GGCGCC 1 cut(s) 306
DpnI GATC 3 cut(s) 11, 174, 389
DpnII GATC 3 cut(s) 9, 172, 387
Eam1104I CTCTTC 2 cut(s) 228, 258
EarI CTCTTC 2 cut(s) 228, 258
Ecl136II GAGCTC 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 196
Eco31I GGTCTC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 194
Eco57I CTGAAG 2 cut(s) 282, 300
EcoICRI GAGCTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 80
EcoT22I ATGCAT 2 cut(s) 291, 385
EcoT38I GRGCYC 1 cut(s) 196
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
FaeI CATG 1 cut(s) 293
FaiI YATR 4 cut(s) 61, 291, 369, 371
FatI CATG 1 cut(s) 289
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 1 cut(s) 175
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 216
GlaI GCGC 1 cut(s) 306
GluI GCNGC 1 cut(s) 216
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 308
HhaI GCGC 1 cut(s) 307
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 1 cut(s) 293
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HphI GGTGA 1 cut(s) 374
Hpy188I TCNGA 2 cut(s) 107, 172
Hpy188III TCNNGA 6 cut(s) 34, 44, 52, 176, 206, 273
HpyAV CCTTC 1 cut(s) 343
HpyCH4IV ACGT 2 cut(s) 142, 280
HpyCH4V TGCA 2 cut(s) 289, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 311
HpyF3I CTNAG 3 cut(s) 74, 104, 150
HpySE526I ACGT 2 cut(s) 142, 280
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 1 cut(s) 293
HspAI GCGC 1 cut(s) 305
KasI GGCGCC 1 cut(s) 304
Kzo9I GATC 3 cut(s) 9, 172, 387
LmnI GCTCC 3 cut(s) 199, 208, 408
LpnPI CCDG 5 cut(s) 47, 67, 94, 219, 225
Lsp1109I GCAGC 1 cut(s) 227
MaeII ACGT 2 cut(s) 142, 280
MaeIII GTNAC 2 cut(s) 99, 362
MalI GATC 3 cut(s) 11, 174, 389
MboI GATC 3 cut(s) 9, 172, 387
MboII GAAGA 3 cut(s) 242, 245, 275
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 3 cut(s) 86, 243, 393
Mly113I GGCGCC 1 cut(s) 305
MnlI CCTC 3 cut(s) 15, 229, 259
Mph1103I ATGCAT 2 cut(s) 291, 385
MseI TTAA 2 cut(s) 111, 392
MspR9I CCNGG 1 cut(s) 82
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 200, 311
NarI GGCGCC 1 cut(s) 305
NdeII GATC 3 cut(s) 9, 172, 387
NlaIII CATG 1 cut(s) 293
NlaIV GGNNCC 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 362
NsiI ATGCAT 2 cut(s) 291, 385
NspI RCATGY 1 cut(s) 293
PaeI GCATGC 1 cut(s) 293
PctI GAATGC 1 cut(s) 385
PkrI GCNGC 1 cut(s) 217
PluTI GGCGCC 1 cut(s) 308
Psp124BI GAGCTC 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 80
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 306
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
SacI GAGCTC 1 cut(s) 196
SaqAI TTAA 2 cut(s) 111, 392
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 3 cut(s) 9, 172, 387
ScrFI CCNGG 1 cut(s) 82
SduI GDGCHC 1 cut(s) 196
SetI ASST 4 cut(s) 145, 196, 270, 283
SfoI GGCGCC 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
SphI GCATGC 1 cut(s) 293
Sse9I AATT 3 cut(s) 86, 243, 393
SspDI GGCGCC 1 cut(s) 304
SstI GAGCTC 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 80
TaiI ACGT 2 cut(s) 145, 283
TaqI TCGA 3 cut(s) 12, 64, 272
TasI AATT 3 cut(s) 86, 243, 393
TatI WGTACW 1 cut(s) 397
Tru1I TTAA 2 cut(s) 111, 392
Tru9I TTAA 2 cut(s) 111, 392
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 362
XapI RAATTY 1 cut(s) 243
XceI RCATGY 1 cut(s) 293
Zsp2I ATGCAT 2 cut(s) 291, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.