Rh5BG211300

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015747
Physical Location & Seq
Forward (+)
24497098 .. 24497783
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG211300.1

Sequence Viewer

Length: 360 bp
ATGAGCATTGAGTTCAAGAAAATATATCGAACAAGTCTAAGAGCCAGGAAATTGTTTGACGAGTTACTCAGAGTTAAGAGACAGCAACAACATCGCCATTTAGAACGTGATACTAAGCAACAAAGGATGGTCTCTGATCTTGAAGAAAGAGAACGAGCTGCCTTTGCTCCAGACCCAGCAGCCACAAAAAGAGAAGAAGAGGAGAGAATTTTTAGGAAACTTGCTGAAGAGGATTCGAGAATACGTCCAATGCATGCGAGTAAAAGGGCGCCTACTGCTTCAGTTCCCAAAAAAGAGAATGGGAGAGTTGGGAAGGAGAGTGTGGGTGGTGCTGAGTTGGGAAGAATAGAAAAAACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

119

Amino Acids

13.95

Weight (kDa)

10.17

Isoelectric Point (pI)

65.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 268
AcsI RAATTY 1 cut(s) 207
AcuI CTGAAG 2 cut(s) 246, 264
AcyI GRCGYC 1 cut(s) 269
AgsI TTSAA 2 cut(s) 16, 143
AjnI CCWGG 1 cut(s) 44
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw26I GTCTC 2 cut(s) 73, 136
ApeKI GCWGC 2 cut(s) 158, 179
ApoI RAATTY 1 cut(s) 207
AspLEI GCGC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 145, 191
BccI CCATC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 73, 136
BfoI RGCGCY 1 cut(s) 272
BisI GCNGC 2 cut(s) 159, 180
BlsI GCNGC 2 cut(s) 160, 181
Bme1390I CCNGG 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 136
BseBI CCWGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 82, 324
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 145, 191
BseYI CCCAGC 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 268
BsmAI GTCTC 2 cut(s) 73, 136
Bso31I GGTCTC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 136
BspCNI CTCAG 2 cut(s) 81, 325
BspLI GGNNCC 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 136
BssMI GATC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 46
Bst6I CTCTTC 2 cut(s) 192, 222
BstACI GRCGYC 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 4 cut(s) 38, 68, 114, 333
BstF5I GGATG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 2 cut(s) 73, 136
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 164, 275
BstNI CCWGG 1 cut(s) 46
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 44
BstV1I GCAGC 2 cut(s) 145, 191
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 255
CfoI GCGC 1 cut(s) 271
CviAII CATG 1 cut(s) 254
CviJI RGCY 3 cut(s) 44, 158, 182
CviKI_1 RGCY 3 cut(s) 44, 158, 182
DdeI CTNAG 4 cut(s) 38, 68, 114, 333
DinI GGCGCC 1 cut(s) 270
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 192, 222
EarI CTCTTC 2 cut(s) 192, 222
Eco31I GGTCTC 1 cut(s) 136
Eco57I CTGAAG 2 cut(s) 246, 264
EcoRII CCWGG 1 cut(s) 44
EcoT22I ATGCAT 1 cut(s) 255
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
FaeI CATG 1 cut(s) 257
FaiI YATR 2 cut(s) 25, 255
FatI CATG 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 159, 180
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 2 cut(s) 159, 180
GlaI GCGC 1 cut(s) 270
GluI GCNGC 2 cut(s) 159, 180
GsaI CCCAGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 272
HhaI GCGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 1 cut(s) 257
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HinfI GANTC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 71, 136
Hpy188III TCNNGA 4 cut(s) 16, 140, 170, 237
HpyAV CCTTC 1 cut(s) 307
HpyCH4IV ACGT 3 cut(s) 106, 244, 356
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 275
HpyF3I CTNAG 4 cut(s) 38, 68, 114, 333
HpySE526I ACGT 3 cut(s) 106, 244, 356
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 1 cut(s) 257
HspAI GCGC 1 cut(s) 269
KasI GGCGCC 1 cut(s) 268
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 31, 58, 183, 189
Lsp1109I GCAGC 2 cut(s) 145, 191
MaeII ACGT 3 cut(s) 106, 244, 356
MaeIII GTNAC 1 cut(s) 63
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 5 cut(s) 155, 206, 209, 239, 354
MluCI AATT 2 cut(s) 50, 207
Mly113I GGCGCC 1 cut(s) 269
MnlI CCTC 2 cut(s) 193, 223
Mph1103I ATGCAT 1 cut(s) 255
MseI TTAA 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 46
MvaI CCWGG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 164, 275
NarI GGCGCC 1 cut(s) 269
NdeII GATC 1 cut(s) 136
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 255
NspI RCATGY 1 cut(s) 257
PaeI GCATGC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 2 cut(s) 160, 181
PluTI GGCGCC 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 44
PspFI CCCAGC 1 cut(s) 175
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 2 cut(s) 159, 180
Sau3AI GATC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 46
SetI ASST 4 cut(s) 109, 160, 247, 359
SfoI GGCGCC 1 cut(s) 270
SphI GCATGC 1 cut(s) 257
Sse9I AATT 2 cut(s) 50, 207
SspDI GGCGCC 1 cut(s) 268
StyD4I CCNGG 1 cut(s) 44
TaiI ACGT 3 cut(s) 109, 247, 359
TaqI TCGA 2 cut(s) 28, 236
TasI AATT 2 cut(s) 50, 207
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseI GCWGC 2 cut(s) 158, 179
XapI RAATTY 1 cut(s) 207
XceI RCATGY 1 cut(s) 257
Zsp2I ATGCAT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.