Rmu_sc0019527.1_g000001

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019527.1
OG0015747
Physical Location & Seq
Forward (+)
1 .. 491
491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019527.1_g000001.1.cds

Sequence Viewer

Length: 371 bp
tttttcatccattattgtcagagttcaagaaaatatatcgaacaagtctaagagccaggaaattgtttgacgagttactcagagttaagagacagcaacaacatcgccatttagaacgtgatactaagcaacaaaggatggtctctgatcttgaagcaagagaacgagctgcctttgctccagacccagcagccacaaaaagagaagaagaggagagaatttttaggaaacttgctgaagaggtttcgagaatacgtccaatgcatgcgagtaaaagggcgcctactgcttcagttcccaaaaaagagaatgggagagttgggaaggagagtgtgggtggtgctgagttgggaagaatagaaaaaacgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

122

Amino Acids

14.24

Weight (kDa)

10.44

Isoelectric Point (pI)

52.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 279
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 2 cut(s) 257, 275
AcyI GRCGYC 1 cut(s) 280
AgsI TTSAA 2 cut(s) 27, 154
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw26I GTCTC 2 cut(s) 84, 147
ApeKI GCWGC 2 cut(s) 169, 190
ApoI RAATTY 1 cut(s) 218
AspLEI GCGC 1 cut(s) 282
BanI GGYRCC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 156, 202
BccI CCATC 1 cut(s) 132
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BciT130I CCWGG 1 cut(s) 57
BcoDI GTCTC 2 cut(s) 84, 147
BfoI RGCGCY 1 cut(s) 283
BisI GCNGC 2 cut(s) 170, 191
BlsI GCNGC 2 cut(s) 171, 192
Bme1390I CCNGG 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 280
BsaI GGTCTC 1 cut(s) 147
BseBI CCWGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 6, 143
BseMII CTCAG 2 cut(s) 93, 335
BseRI GAGGAG 1 cut(s) 226
BseXI GCAGC 2 cut(s) 156, 202
BseYI CCCAGC 1 cut(s) 186
BshNI GGYRCC 1 cut(s) 279
BsmAI GTCTC 2 cut(s) 84, 147
Bso31I GGTCTC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 147
BspCNI CTCAG 2 cut(s) 92, 336
BspLI GGNNCC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 279
BspTNI GGTCTC 1 cut(s) 147
BssMI GATC 1 cut(s) 147
BssNI GRCGYC 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 57
Bst6I CTCTTC 2 cut(s) 203, 233
BstACI GRCGYC 1 cut(s) 280
BstC8I GCNNGC 1 cut(s) 266
BstDEI CTNAG 4 cut(s) 49, 79, 125, 344
BstF5I GGATG 2 cut(s) 6, 143
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 2 cut(s) 84, 147
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 2 cut(s) 175, 286
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 156, 202
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 2 cut(s) 6, 143
Cac8I GCNNGC 1 cut(s) 266
CfoI GCGC 1 cut(s) 282
CviAII CATG 1 cut(s) 265
CviJI RGCY 3 cut(s) 55, 169, 193
CviKI_1 RGCY 3 cut(s) 55, 169, 193
DdeI CTNAG 4 cut(s) 49, 79, 125, 344
DinI GGCGCC 1 cut(s) 281
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 203, 233
EarI CTCTTC 2 cut(s) 203, 233
Eco31I GGTCTC 1 cut(s) 147
Eco57I CTGAAG 2 cut(s) 257, 275
EcoRII CCWGG 1 cut(s) 55
EcoT22I ATGCAT 1 cut(s) 266
EgeI GGCGCC 1 cut(s) 281
EheI GGCGCC 1 cut(s) 281
FaeI CATG 1 cut(s) 268
FaiI YATR 2 cut(s) 36, 266
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 170, 191
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 170, 191
GlaI GCGC 1 cut(s) 281
GluI GCNGC 2 cut(s) 170, 191
GsaI CCCAGC 1 cut(s) 190
GsuI CTGGAG 1 cut(s) 164
HaeII RGCGCY 1 cut(s) 283
HhaI GCGC 1 cut(s) 282
Hin1I GRCGYC 1 cut(s) 280
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
Hpy188I TCNGA 3 cut(s) 21, 82, 147
Hpy188III TCNNGA 4 cut(s) 27, 151, 181, 248
HpyAV CCTTC 1 cut(s) 318
HpyCH4IV ACGT 3 cut(s) 117, 255, 367
HpyCH4V TGCA 1 cut(s) 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 286
HpyF3I CTNAG 4 cut(s) 49, 79, 125, 344
HpySE526I ACGT 3 cut(s) 117, 255, 367
Hsp92I GRCGYC 1 cut(s) 280
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 1 cut(s) 280
KasI GGCGCC 1 cut(s) 279
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 4 cut(s) 42, 69, 194, 200
Lsp1109I GCAGC 2 cut(s) 156, 202
MaeII ACGT 3 cut(s) 117, 255, 367
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 4 cut(s) 217, 220, 250, 365
MluCI AATT 2 cut(s) 61, 218
Mly113I GGCGCC 1 cut(s) 280
MnlI CCTC 2 cut(s) 204, 234
Mph1103I ATGCAT 1 cut(s) 266
MseI TTAA 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 175, 286
NarI GGCGCC 1 cut(s) 280
NdeII GATC 1 cut(s) 147
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 1 cut(s) 281
NsiI ATGCAT 1 cut(s) 266
NspI RCATGY 1 cut(s) 268
PaeI GCATGC 1 cut(s) 268
PkrI GCNGC 2 cut(s) 171, 192
PluTI GGCGCC 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 186
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 2 cut(s) 170, 191
Sau3AI GATC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 57
SetI ASST 5 cut(s) 120, 171, 245, 258, 370
SfoI GGCGCC 1 cut(s) 281
SphI GCATGC 1 cut(s) 268
Sse9I AATT 2 cut(s) 61, 218
SspDI GGCGCC 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 55
TaiI ACGT 3 cut(s) 120, 258, 370
TaqI TCGA 2 cut(s) 39, 247
TasI AATT 2 cut(s) 61, 218
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseI GCWGC 2 cut(s) 169, 190
XapI RAATTY 1 cut(s) 218
XceI RCATGY 1 cut(s) 268
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.