Rh3AG072100

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0015747
Physical Location & Seq
Forward (+)
5724772 .. 5727702
2931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG072100.1

Sequence Viewer

Length: 561 bp
ATGGCCCACGGAAAAGTCAGTCTCGCTCAAGAACTCCTCCCCTCGCCGATCTTCTCCGCCACCAAAGACTCGGAGATGGCACAGAGGGAGGAGTTCGAGATGAGCGTCGCAGGATCTGGAGAGGATGTTGAATTAGTTTTTCATCCATTATTGTCAGGGTTCAAGAAAATATATCGAACAAGTCTAAGAGCCAGGAAATTGTTTGATGAGTTACTCAGAGTTAAGAGACAGCAACAACATCGCCATTTAGAACGTGATACTAAGCAACAAAGGATGGTCTCTGATCTTGAAGCAAGAGAACGAGCTGCCTTTGCTCCAGACCCAGCAGCCACAAAAAGAGAAGAAGAGGAGAGAATTTTTAGGAAACTTGCTGAAGAGGTTTCGAGAATACGTCCAATGCATGCGAGTAAAAGGGCGCCTACTGCTTCAGTTCCCAAAAAAGAGAATGGGAGAGTTGGGAAGGAGAGTGTGGGTGGTGCTGAGTTGGGAAGAATAGAAAAAACACTATATACTACCGAATACATTGATCTTAATTGTACTTGGGTGGAGCAATGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

186

Amino Acids

21.24

Weight (kDa)

8.87

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 415
AciI CCGC 1 cut(s) 57
AclWI GGATC 1 cut(s) 121
AcsI RAATTY 1 cut(s) 354
AcuI CTGAAG 2 cut(s) 393, 411
AcyI GRCGYC 1 cut(s) 416
AfaI GTAC 1 cut(s) 538
AgsI TTSAA 3 cut(s) 131, 163, 290
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw26I GTCTC 3 cut(s) 26, 220, 283
AlwI GGATC 1 cut(s) 121
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 305, 326
ApoI RAATTY 1 cut(s) 354
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 415
BbvI GCAGC 2 cut(s) 292, 338
BccI CCATC 2 cut(s) 70, 268
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 1 cut(s) 193
BcoDI GTCTC 3 cut(s) 26, 220, 283
BfoI RGCGCY 1 cut(s) 419
BisI GCNGC 2 cut(s) 306, 327
BlsI GCNGC 2 cut(s) 307, 328
Bme1390I CCNGG 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 193
BpmI CTGGAG 2 cut(s) 138, 300
BpuEI CTTGAG 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 416
BsaI GGTCTC 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bse3DI GCAATG 1 cut(s) 557
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 3 cut(s) 130, 142, 279
BseMI GCAATG 1 cut(s) 557
BseMII CTCAG 2 cut(s) 229, 471
BseRI GAGGAG 3 cut(s) 26, 104, 362
BseXI GCAGC 2 cut(s) 292, 338
BseYI CCCAGC 1 cut(s) 322
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 415
BsmAI GTCTC 3 cut(s) 26, 220, 283
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 283
Bsp143I GATC 4 cut(s) 48, 113, 283, 526
BspACI CCGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 228, 472
BspLI GGNNCC 1 cut(s) 417
BspPI GGATC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 415
BspTNI GGTCTC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 557
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 4 cut(s) 48, 113, 283, 526
BssNI GRCGYC 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 193
Bst6I CTCTTC 2 cut(s) 339, 369
BstACI GRCGYC 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 4 cut(s) 185, 215, 261, 480
BstDSI CCRYGG 1 cut(s) 7
BstF5I GGATG 3 cut(s) 130, 142, 279
BstH2I RGCGCY 1 cut(s) 419
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 4 cut(s) 51, 116, 286, 529
BstMAI GTCTC 3 cut(s) 26, 220, 283
BstMBI GATC 4 cut(s) 48, 113, 283, 526
BstMWI GCNNNNNNNGC 2 cut(s) 311, 422
BstNI CCWGG 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 292, 338
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 7
BtgZI GCGATG 1 cut(s) 224
BtsCI GGATG 3 cut(s) 130, 142, 279
Cac8I GCNNGC 1 cut(s) 402
CaiI CAGNNNCTG 1 cut(s) 116
CfoI GCGC 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 537
CviAII CATG 1 cut(s) 401
CviJI RGCY 5 cut(s) 5, 191, 305, 329, 558
CviKI_1 RGCY 5 cut(s) 5, 191, 305, 329, 558
CviQI GTAC 1 cut(s) 537
DdeI CTNAG 4 cut(s) 185, 215, 261, 480
DinI GGCGCC 1 cut(s) 417
DpnI GATC 4 cut(s) 50, 115, 285, 528
DpnII GATC 4 cut(s) 48, 113, 283, 526
Eam1104I CTCTTC 2 cut(s) 339, 369
EarI CTCTTC 2 cut(s) 339, 369
EciI GGCGGA 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 283
Eco57I CTGAAG 2 cut(s) 393, 411
EcoRII CCWGG 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 402
EgeI GGCGCC 1 cut(s) 417
EheI GGCGCC 1 cut(s) 417
FaeI CATG 1 cut(s) 404
FaiI YATR 4 cut(s) 172, 402, 508, 510
FatI CATG 1 cut(s) 400
Fnu4HI GCNGC 2 cut(s) 306, 327
FokI GGATG 3 cut(s) 129, 137, 286
Fsp4HI GCNGC 2 cut(s) 306, 327
GlaI GCGC 1 cut(s) 417
GluI GCNGC 2 cut(s) 306, 327
GsaI CCCAGC 1 cut(s) 326
GsuI CTGGAG 2 cut(s) 138, 300
HaeII RGCGCY 1 cut(s) 419
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 418
Hin1I GRCGYC 1 cut(s) 416
Hin1II CATG 1 cut(s) 404
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HinfI GANTC 1 cut(s) 68
Hpy188I TCNGA 3 cut(s) 73, 218, 283
Hpy188III TCNNGA 7 cut(s) 29, 97, 117, 163, 287, 317, 384
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 454
HpyCH4IV ACGT 2 cut(s) 253, 391
HpyCH4V TGCA 1 cut(s) 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 422
HpyF3I CTNAG 4 cut(s) 185, 215, 261, 480
HpySE526I ACGT 2 cut(s) 253, 391
Hsp92I GRCGYC 1 cut(s) 416
Hsp92II CATG 1 cut(s) 404
HspAI GCGC 1 cut(s) 416
KasI GGCGCC 1 cut(s) 415
Kzo9I GATC 4 cut(s) 48, 113, 283, 526
LmnI GCTCC 2 cut(s) 319, 547
LpnPI CCDG 7 cut(s) 96, 102, 141, 178, 205, 330, 336
Lsp1109I GCAGC 2 cut(s) 292, 338
MaeII ACGT 2 cut(s) 253, 391
MaeIII GTNAC 1 cut(s) 210
MalI GATC 4 cut(s) 50, 115, 285, 528
MboI GATC 4 cut(s) 48, 113, 283, 526
MboII GAAGA 5 cut(s) 43, 353, 356, 386, 501
MflI RGATCY 1 cut(s) 113
MluCI AATT 4 cut(s) 131, 197, 354, 532
Mly113I GGCGCC 1 cut(s) 416
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 7 cut(s) 47, 52, 78, 82, 115, 340, 370
Mph1103I ATGCAT 1 cut(s) 402
MseI TTAA 2 cut(s) 222, 531
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 311, 422
NarI GGCGCC 1 cut(s) 416
NdeII GATC 4 cut(s) 48, 113, 283, 526
NlaIII CATG 1 cut(s) 404
NlaIV GGNNCC 1 cut(s) 417
NsiI ATGCAT 1 cut(s) 402
NspI RCATGY 1 cut(s) 404
PaeI GCATGC 1 cut(s) 404
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PkrI GCNGC 2 cut(s) 307, 328
PleI GAGTC 1 cut(s) 62
PluTI GGCGCC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 191
PspFI CCCAGC 1 cut(s) 322
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 1 cut(s) 538
RsaNI GTAC 1 cut(s) 537
SaqAI TTAA 2 cut(s) 222, 531
SatI GCNGC 2 cut(s) 306, 327
Sau3AI GATC 4 cut(s) 48, 113, 283, 526
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 193
SetI ASST 4 cut(s) 256, 307, 381, 394
SfoI GGCGCC 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
SphI GCATGC 1 cut(s) 404
Sse9I AATT 4 cut(s) 131, 197, 354, 532
SsiI CCGC 1 cut(s) 57
SspDI GGCGCC 1 cut(s) 415
StyD4I CCNGG 1 cut(s) 191
TaiI ACGT 2 cut(s) 256, 394
TaqI TCGA 3 cut(s) 96, 175, 383
TasI AATT 4 cut(s) 131, 197, 354, 532
TatI WGTACW 1 cut(s) 536
Tru1I TTAA 2 cut(s) 222, 531
Tru9I TTAA 2 cut(s) 222, 531
TseI GCWGC 2 cut(s) 305, 326
TspDTI ATGAA 1 cut(s) 131
TspGWI ACGGA 1 cut(s) 24
XapI RAATTY 1 cut(s) 354
XceI RCATGY 1 cut(s) 404
Zsp2I ATGCAT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.