Rh3BG074000

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0015747
Physical Location & Seq
Forward (+)
5724772 .. 5726672
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG074000.1

Sequence Viewer

Length: 417 bp
ATGGCCCACGGAAAAGTCAGTCTCGCTCAAGAACTCCTCCCCTCGCCGATCTTCTCCGCCACCAAAGGGTTCAAGAAAATATATCGAACAAGTCTAAGAGCCAGGAAATTGTTTGATGAGTTACTCAGAGTTAAGAGACAGCAACAACATCGCCATTTAGAACGTGATACTAAGCAACAAAGGATGGTCTCTGATCTTGAAGCAAGAGAACGAGCTGCCTTTGCTCCAGACCCAGCAGCCACAAAAAGAGAAGAAGAGGAGAGAATTTTTAGGAAACTTGCTGAAGAGGTTTCGAGAATACGTCCAATGCATGCGAGTAAAAGGGCGCCTACTGCTTCAGTTCCCAAAAAAGAGAATGGGAGAGTTGGGAAGGAGAGTGTGGGTGGTGCTGAGTTGGGAAGAATAGAAAAAACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

138

Amino Acids

15.78

Weight (kDa)

10.51

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 325
AciI CCGC 1 cut(s) 57
AcsI RAATTY 1 cut(s) 264
AcuI CTGAAG 2 cut(s) 303, 321
AcyI GRCGYC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 2 cut(s) 73, 200
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw26I GTCTC 3 cut(s) 26, 130, 193
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 215, 236
ApoI RAATTY 1 cut(s) 264
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 325
BbvI GCAGC 2 cut(s) 202, 248
BccI CCATC 1 cut(s) 178
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 1 cut(s) 103
BcoDI GTCTC 3 cut(s) 26, 130, 193
BfoI RGCGCY 1 cut(s) 329
BisI GCNGC 2 cut(s) 216, 237
BlsI GCNGC 2 cut(s) 217, 238
Bme1390I CCNGG 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 326
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 7
Bsc4I CCNNNNNNNGG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 139, 381
BseRI GAGGAG 2 cut(s) 26, 272
BseXI GCAGC 2 cut(s) 202, 248
BseYI CCCAGC 1 cut(s) 232
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 3 cut(s) 26, 130, 193
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 193
Bsp143I GATC 2 cut(s) 48, 193
BspACI CCGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 138, 382
BspLI GGNNCC 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 325
BspTNI GGTCTC 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 2 cut(s) 48, 193
BssNI GRCGYC 1 cut(s) 326
Bst2UI CCWGG 1 cut(s) 103
Bst6I CTCTTC 2 cut(s) 249, 279
BstACI GRCGYC 1 cut(s) 326
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 4 cut(s) 95, 125, 171, 390
BstDSI CCRYGG 1 cut(s) 7
BstF5I GGATG 1 cut(s) 189
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 2 cut(s) 51, 196
BstMAI GTCTC 3 cut(s) 26, 130, 193
BstMBI GATC 2 cut(s) 48, 193
BstMWI GCNNNNNNNGC 2 cut(s) 221, 332
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 202, 248
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 7
BtgZI GCGATG 1 cut(s) 134
BtsCI GGATG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 312
CfoI GCGC 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 311
CviJI RGCY 4 cut(s) 5, 101, 215, 239
CviKI_1 RGCY 4 cut(s) 5, 101, 215, 239
DdeI CTNAG 4 cut(s) 95, 125, 171, 390
DinI GGCGCC 1 cut(s) 327
DpnI GATC 2 cut(s) 50, 195
DpnII GATC 2 cut(s) 48, 193
Eam1104I CTCTTC 2 cut(s) 249, 279
EarI CTCTTC 2 cut(s) 249, 279
EciI GGCGGA 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 193
Eco57I CTGAAG 2 cut(s) 303, 321
EcoRII CCWGG 1 cut(s) 101
EcoT22I ATGCAT 1 cut(s) 312
EgeI GGCGCC 1 cut(s) 327
EheI GGCGCC 1 cut(s) 327
FaeI CATG 1 cut(s) 314
FaiI YATR 2 cut(s) 82, 312
FatI CATG 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 216, 237
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 2 cut(s) 216, 237
GlaI GCGC 1 cut(s) 327
GluI GCNGC 2 cut(s) 216, 237
GsaI CCCAGC 1 cut(s) 236
GsuI CTGGAG 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 329
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 328
Hin1I GRCGYC 1 cut(s) 326
Hin1II CATG 1 cut(s) 314
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
Hpy188I TCNGA 2 cut(s) 128, 193
Hpy188III TCNNGA 5 cut(s) 29, 73, 197, 227, 294
HpyAV CCTTC 1 cut(s) 364
HpyCH4IV ACGT 3 cut(s) 163, 301, 413
HpyCH4V TGCA 1 cut(s) 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 332
HpyF3I CTNAG 4 cut(s) 95, 125, 171, 390
HpySE526I ACGT 3 cut(s) 163, 301, 413
Hsp92I GRCGYC 1 cut(s) 326
Hsp92II CATG 1 cut(s) 314
HspAI GCGC 1 cut(s) 326
KasI GGCGCC 1 cut(s) 325
Kzo9I GATC 2 cut(s) 48, 193
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 4 cut(s) 88, 115, 240, 246
Lsp1109I GCAGC 2 cut(s) 202, 248
MaeII ACGT 3 cut(s) 163, 301, 413
MaeIII GTNAC 1 cut(s) 120
MalI GATC 2 cut(s) 50, 195
MboI GATC 2 cut(s) 48, 193
MboII GAAGA 5 cut(s) 43, 263, 266, 296, 411
MluCI AATT 2 cut(s) 107, 264
Mly113I GGCGCC 1 cut(s) 326
MnlI CCTC 4 cut(s) 47, 52, 250, 280
Mph1103I ATGCAT 1 cut(s) 312
MseI TTAA 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 2 cut(s) 221, 332
NarI GGCGCC 1 cut(s) 326
NdeII GATC 2 cut(s) 48, 193
NlaIII CATG 1 cut(s) 314
NlaIV GGNNCC 1 cut(s) 327
NsiI ATGCAT 1 cut(s) 312
NspI RCATGY 1 cut(s) 314
PaeI GCATGC 1 cut(s) 314
PkrI GCNGC 2 cut(s) 217, 238
PluTI GGCGCC 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 232
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 2 cut(s) 216, 237
Sau3AI GATC 2 cut(s) 48, 193
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 103
SetI ASST 5 cut(s) 166, 217, 291, 304, 416
SfoI GGCGCC 1 cut(s) 327
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
SphI GCATGC 1 cut(s) 314
Sse9I AATT 2 cut(s) 107, 264
SsiI CCGC 1 cut(s) 57
SspDI GGCGCC 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 101
TaiI ACGT 3 cut(s) 166, 304, 416
TaqI TCGA 2 cut(s) 85, 293
TasI AATT 2 cut(s) 107, 264
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseI GCWGC 2 cut(s) 215, 236
TspGWI ACGGA 1 cut(s) 24
XapI RAATTY 1 cut(s) 264
XceI RCATGY 1 cut(s) 314
Zsp2I ATGCAT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.