Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015747

Physical Location & Seq

Genomic Coordinates Forward (+)

15274693 .. 15275304

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAGTGTGGCGGGGTTCCCTATCGGAGGACCTTGCTCGCACCGGAGCTTACTCAGATCTCTTCATTTTCATCACCGAAGGCGAAGCCGATATTTGCTGCTACAGTAGCGCCTCTGATTTGTTATCCACAATCGGAAGCAGGAGACAGCGGAATGAGCCAAGACGCCAAGAGAAGCGTTCCGAATTTCGACGAGCGGAAACCCTCGCCTACTGCCACCACCTCCACCGGCAAGCGTATATCAAAATCGAATTTGCTCTTTGCTGCTGTGCTAATAGGGTTTGGCTTAATCCAGAGATGGCTGCCGATGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0010970 GO:0015629 GO:0015630 GO:0016043 GO:0016459 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0046982 GO:0046983 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0097110 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

105

Amino Acids

11.19

Weight (kDa)

9.62

Isoelectric Point (pI)

79.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015747)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0493811
rosa_laevigata	RLG00000012914 RLG00000019721 RLG00000022619 RLG00000022927 RLG00000025063 RLG00000036784
rosa_multiflora	Rmu_sc0001035.1_g000033 Rmu_sc0019527.1_g000001
rosa_rugosa	Rorug02G0255200
rosa_samantha	Rh3AG072100 Rh3BG074000 Rh3BG322000 Rh5AG212100 Rh5BG211300 Rh7CG103800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	196
AciI	CCGC	3 cut(s)	12, 150, 196
AcsI	RAATTY	2 cut(s)	184, 250
AcyI	GRCGYC	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	27
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	98, 263, 301
ApoI	RAATTY	2 cut(s)	184, 250
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	30
BbvI	GCAGC	3 cut(s)	85, 250, 288
BccI	CCATC	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	113
BglII	AGATCT	1 cut(s)	57
BisI	GCNGC	3 cut(s)	99, 264, 302
BlsI	GCNGC	3 cut(s)	100, 265, 303
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	85, 250, 288
BsiSI	CCGG	2 cut(s)	44, 228
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	3 cut(s)	12, 150, 196
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	18
BsrBI	CCGCTC	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	227
BssMI	GATC	1 cut(s)	57
BssNI	GRCGYC	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	67
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	39, 233
BstDEI	CTNAG	1 cut(s)	54
BstENI	CCTNNNNNAGG	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 156
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	3 cut(s)	85, 250, 288
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	39, 233
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	1 cut(s)	173
CviJI	RGCY	5 cut(s)	49, 88, 159, 285, 301
CviKI_1	RGCY	5 cut(s)	49, 88, 159, 285, 301
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	30
EcoNI	CCTNNNNNAGG	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	30
FaiI	YATR	2 cut(s)	239, 313
FauI	CCCGC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	99, 264, 302
Fsp4HI	GCNGC	3 cut(s)	99, 264, 302
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	3 cut(s)	99, 264, 302
HaeII	RGCGCY	1 cut(s)	113
HapII	CCGG	2 cut(s)	44, 228
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HpaII	CCGG	2 cut(s)	44, 228
HphI	GGTGA	1 cut(s)	66
Hpy188I	TCNGA	5 cut(s)	27, 57, 117, 136, 183
Hpy188III	TCNNGA	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 156
HpyF3I	CTNAG	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	165
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	4 cut(s)	57, 126, 241, 305
Lsp1109I	GCAGC	3 cut(s)	85, 250, 288
MalI	GATC	1 cut(s)	59
MbiI	CCGCTC	1 cut(s)	196
MboI	GATC	1 cut(s)	57
MboII	GAAGA	1 cut(s)	54
MflI	RGATCY	1 cut(s)	57
MluCI	AATT	2 cut(s)	184, 250
MnlI	CCTC	4 cut(s)	21, 123, 214, 232
MseI	TTAA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	2 cut(s)	44, 228
MwoI	GCNNNNNNNGC	2 cut(s)	107, 156
NdeII	GATC	1 cut(s)	57
NlaIV	GGNNCC	1 cut(s)	18
PkrI	GCNGC	3 cut(s)	100, 265, 303
PpuMI	RGGWCCY	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	30
PspPPI	RGGWCCY	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	3 cut(s)	99, 264, 302
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	1 cut(s)	30
SetI	ASST	3 cut(s)	35, 51, 224
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	30
Sse9I	AATT	2 cut(s)	184, 250
SsiI	CCGC	3 cut(s)	12, 150, 196
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	189, 248
TasI	AATT	2 cut(s)	184, 250
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TseI	GCWGC	3 cut(s)	98, 263, 301
TspDTI	ATGAA	2 cut(s)	54, 60
VpaK11BI	GGWCC	1 cut(s)	30
XagI	CCTNNNNNAGG	1 cut(s)	25
XapI	RAATTY	2 cut(s)	184, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.