Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015747

Physical Location & Seq

Genomic Coordinates Reverse (-)

26737835 .. 26739990

Gene Structure 2156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0255200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTATGAATCTGATGCCATATCTGGCTTTTCATCATCTTTCCCAGATTATGAGGAGATTATTGTTAGACACGAAGCTGCTCAACTTGACTTCTTAGTAAACTACATGAACTACTTAAGATTGGGCAGCTTGATGCAGCGGAACTTGATATTGATATGCGACAGTCACCTGGACAATCTGCTGGTGATTTCACTTTTCAGGGATTTAACGACCGGCCATGTTCTAGATATTGTGTTGTCTCCCAATCTCAGAGCCTCAAGTTTATTTTTCAGAGATTCACCAACAGAAACAAGCCACAGCTTAGCAAAGATCAGTAACAAGATTGTACTGGATGGCATTATACCAGATTTAATGGAGGGGGAAACTACCATGGTCGTTGGAGGTCATAGATCAAGGAGAAAATGGCGAACAACAAAAGAAATTCTCGATCTGCAGAGACCATATCTTCCTATTGGATTTGCTGTCTTCCTGGATCTGTTGTTTTTGTACATTCCTATTATCAACGAGGATATGAAGTGCCTGGGATTGGACACATATCGGCTATCTTATAGTACTTGGAGCATTTTGGTATTTTTTTTCCATTCAACAAGAGACGCTGCTTGCTTGCAATATGCAAACCCAGTACTTTTGACAGTCACAACAATATCCTCAGAAATATCACACTTCTATATGGTGCCAATGCTTCAAAATATGGATCAACAAACAAGTGTTGGAAGCAATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

241

Amino Acids

27.54

Weight (kDa)

5.28

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015747)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0493811
rosa_laevigata	RLG00000012914 RLG00000019721 RLG00000022619 RLG00000022927 RLG00000025063 RLG00000036784
rosa_multiflora	Rmu_sc0001035.1_g000033 Rmu_sc0019527.1_g000001
rosa_rugosa	Rorug02G0255200
rosa_samantha	Rh3AG072100 Rh3BG074000 Rh3BG322000 Rh5AG212100 Rh5BG211300 Rh7CG103800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	673
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	2 cut(s)	480, 702
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	420
AfaI	GTAC	4 cut(s)	327, 488, 553, 624
AfiI	CCNNNNNNNGG	1 cut(s)	526
AflII	CTTAAG	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	585, 686
AjnI	CCWGG	3 cut(s)	168, 468, 519
AluBI	AGCT	3 cut(s)	77, 129, 300
AluI	AGCT	3 cut(s)	77, 129, 300
Alw26I	GTCTC	3 cut(s)	243, 430, 585
AlwI	GGATC	2 cut(s)	480, 702
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	4 cut(s)	77, 126, 136, 596
ApoI	RAATTY	1 cut(s)	420
AsuHPI	GGTGA	3 cut(s)	158, 196, 270
BanI	GGYRCC	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	457
BbvI	GCAGC	4 cut(s)	64, 138, 148, 583
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	3 cut(s)	170, 470, 521
BcoDI	GTCTC	3 cut(s)	243, 430, 585
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	431
BfrI	CTTAAG	1 cut(s)	115
BisI	GCNGC	4 cut(s)	78, 127, 137, 597
BlpI	GCTNAGC	1 cut(s)	301
BlsI	GCNGC	4 cut(s)	79, 128, 138, 598
BmcAI	AGTACT	2 cut(s)	553, 624
Bme1390I	CCNGG	3 cut(s)	170, 470, 521
BmiI	GGNNCC	1 cut(s)	675
BmrFI	CCNGG	3 cut(s)	170, 470, 521
BmrI	ACTGGG	1 cut(s)	614
BmsI	GCATC	2 cut(s)	4, 123
BmuI	ACTGGG	1 cut(s)	614
BpiI	GAAGAC	1 cut(s)	457
Bpu1102I	GCTNAGC	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	430
BsaJI	CCNNGG	2 cut(s)	369, 520
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	2 cut(s)	333, 620
BseBI	CCWGG	3 cut(s)	170, 470, 521
BseDI	CCNNGG	2 cut(s)	369, 520
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMII	CTCAG	2 cut(s)	262, 663
BseNI	ACTGG	2 cut(s)	333, 620
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	4 cut(s)	64, 138, 148, 583
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	673
BsiEI	CGRYCG	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	3 cut(s)	243, 430, 585
BsmBI	CGTCTC	1 cut(s)	585
BsnI	GGCC	1 cut(s)	216
Bso31I	GGTCTC	1 cut(s)	430
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	5 cut(s)	309, 389, 427, 472, 694
Bsp1720I	GCTNAGC	1 cut(s)	301
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	2 cut(s)	261, 662
BspLI	GGNNCC	1 cut(s)	675
BspMAI	CTGCAG	1 cut(s)	435
BspPI	GGATC	2 cut(s)	480, 702
BspT107I	GGYRCC	1 cut(s)	673
BspTI	CTTAAG	1 cut(s)	115
BspTNI	GGTCTC	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	212
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	333, 620
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	369, 520
BssMI	GATC	5 cut(s)	309, 389, 427, 472, 694
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	3 cut(s)	170, 470, 521
Bst4CI	ACNGT	2 cut(s)	164, 634
BstAFI	CTTAAG	1 cut(s)	115
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	601, 605
BstDEI	CTNAG	4 cut(s)	94, 248, 301, 649
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	5 cut(s)	312, 392, 430, 475, 697
BstMAI	GTCTC	3 cut(s)	243, 430, 585
BstMBI	GATC	5 cut(s)	309, 389, 427, 472, 694
BstMCI	CGRYCG	1 cut(s)	213
BstNI	CCWGG	3 cut(s)	170, 470, 521
BstSCI	CCNGG	3 cut(s)	168, 468, 519
BstSFI	CTRYAG	1 cut(s)	431
BstV1I	GCAGC	4 cut(s)	64, 138, 148, 583
BstV2I	GAAGAC	1 cut(s)	457
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	601, 605
Cfr10I	RCCGGY	1 cut(s)	212
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	4 cut(s)	326, 487, 552, 623
CviAII	CATG	3 cut(s)	106, 218, 370
CviJI	RGCY	8 cut(s)	27, 77, 129, 216, 254, 294, 300, 541
CviKI_1	RGCY	8 cut(s)	27, 77, 129, 216, 254, 294, 300, 541
CviQI	GTAC	4 cut(s)	326, 487, 552, 623
DdeI	CTNAG	4 cut(s)	94, 248, 301, 649
DpnI	GATC	5 cut(s)	311, 391, 429, 474, 696
DpnII	GATC	5 cut(s)	309, 389, 427, 472, 694
EaeI	YGGCCR	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	430
EcoRII	CCWGG	3 cut(s)	168, 468, 519
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
Esp3I	CGTCTC	1 cut(s)	585
FaeI	CATG	3 cut(s)	109, 221, 373
FatI	CATG	3 cut(s)	105, 217, 369
Fnu4HI	GCNGC	4 cut(s)	78, 127, 137, 597
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	4 cut(s)	78, 127, 137, 597
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	4 cut(s)	78, 127, 137, 597
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	1 cut(s)	213
HgaI	GACGC	1 cut(s)	602
Hin1II	CATG	3 cut(s)	109, 221, 373
HinfI	GANTC	2 cut(s)	8, 275
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	3 cut(s)	158, 196, 270
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	5 cut(s)	13, 251, 272, 652, 725
Hpy188III	TCNNGA	2 cut(s)	224, 425
Hpy8I	GTNNAC	1 cut(s)	100
HpyCH4III	ACNGT	2 cut(s)	164, 634
HpyCH4V	TGCA	4 cut(s)	136, 433, 607, 614
HpyF3I	CTNAG	4 cut(s)	94, 248, 301, 649
Hsp92II	CATG	3 cut(s)	109, 221, 373
Kzo9I	GATC	5 cut(s)	309, 389, 427, 472, 694
LmnI	GCTCC	1 cut(s)	558
Lsp1109I	GCAGC	4 cut(s)	64, 138, 148, 583
LweI	GCATC	2 cut(s)	4, 123
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	3 cut(s)	164, 314, 634
MalI	GATC	5 cut(s)	311, 391, 429, 474, 696
MboI	GATC	5 cut(s)	309, 389, 427, 472, 694
MboII	GAAGA	2 cut(s)	437, 457
MflI	RGATCY	1 cut(s)	472
MluCI	AATT	2 cut(s)	420, 718
MmeI	TCCRAC	2 cut(s)	358, 691
MnlI	CCTC	6 cut(s)	46, 265, 349, 374, 499, 658
MseI	TTAA	3 cut(s)	116, 206, 350
MspA1I	CMGCKG	1 cut(s)	139
MspCI	CTTAAG	1 cut(s)	115
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	3 cut(s)	170, 470, 521
MvaI	CCWGG	3 cut(s)	170, 470, 521
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	5 cut(s)	309, 389, 427, 472, 694
NlaIII	CATG	3 cut(s)	109, 221, 373
NlaIV	GGNNCC	1 cut(s)	675
NmuCI	GTSAC	2 cut(s)	164, 634
PfeI	GAWTC	2 cut(s)	8, 275
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	4 cut(s)	79, 128, 138, 598
Psp6I	CCWGG	3 cut(s)	168, 468, 519
PspGI	CCWGG	3 cut(s)	168, 468, 519
PspN4I	GGNNCC	1 cut(s)	675
PstI	CTGCAG	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	4 cut(s)	327, 488, 553, 624
RsaNI	GTAC	4 cut(s)	326, 487, 552, 623
SaqAI	TTAA	3 cut(s)	116, 206, 350
SatI	GCNGC	4 cut(s)	78, 127, 137, 597
Sau3AI	GATC	5 cut(s)	309, 389, 427, 472, 694
ScaI	AGTACT	2 cut(s)	553, 624
ScrFI	CCNGG	3 cut(s)	170, 470, 521
SetI	ASST	5 cut(s)	79, 131, 171, 302, 385
SfaNI	GCATC	2 cut(s)	4, 123
SfcI	CTRYAG	1 cut(s)	431
SmlI	CTYRAG	2 cut(s)	115, 256
SmoI	CTYRAG	2 cut(s)	115, 256
Sse9I	AATT	2 cut(s)	420, 718
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	3 cut(s)	168, 468, 519
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	2 cut(s)	164, 634
TaqI	TCGA	1 cut(s)	426
TasI	AATT	2 cut(s)	420, 718
TatI	WGTACW	4 cut(s)	325, 486, 551, 622
TfiI	GAWTC	2 cut(s)	8, 275
Tru1I	TTAA	3 cut(s)	116, 206, 350
Tru9I	TTAA	3 cut(s)	116, 206, 350
TseFI	GTSAC	2 cut(s)	164, 634
TseI	GCWGC	4 cut(s)	77, 126, 136, 596
Tsp45I	GTSAC	2 cut(s)	164, 634
TspDTI	ATGAA	4 cut(s)	21, 21, 122, 527
Vha464I	CTTAAG	1 cut(s)	115
XapI	RAATTY	1 cut(s)	420
XbaI	TCTAGA	1 cut(s)	223
XspI	CTAG	1 cut(s)	224
ZrmI	AGTACT	2 cut(s)	553, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.