Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0015747

Physical Location & Seq

Genomic Coordinates Forward (+)

25062160 .. 25064892

Gene Structure 2733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG212100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCCCACGGAAAAGTCAGTCTCGCTCAAGAACTCCTCCCCTCGCCGATCTTCTCCGCCACCAAAGATATAAGGGCAATGACAGGGATCGAGTTGTTGAGGCACTACTTCCAGAACACTCAAGAGTTCAAGAAAATATATCGAACAAGTCTAAGAGCCAGGAAATTGTTTGACGAGTTACTCAGAGTTAAGAGACAGCAACAACATCGCCATTTAGAACGTGATACTAAGCAACAAAGGATGGTCTCTGATCTTGAAGAAAGAGAACGAGCTGCCTTTGCTCCAGACCCAGCAGCCACAAAAAGAGAAGAAGAGGAGAGAATTTTTAGGAAACTTGCTGAAGAGGATTCGAGAATACGTCCAATGCATGCGAGTAAAAGGGCGCCTACTGCTTCAGTTCCCAAAAAAGAGAATGGGAGAGTTGGGAAGGAGAGTGTGGGTGGTGCTGAGTTGGGAAGAATAGAAAAAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

157

Amino Acids

18.22

Weight (kDa)

10.08

Isoelectric Point (pI)

58.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015747)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0493811
rosa_laevigata	RLG00000012914 RLG00000019721 RLG00000022619 RLG00000022927 RLG00000025063 RLG00000036784
rosa_multiflora	Rmu_sc0001035.1_g000033 Rmu_sc0019527.1_g000001
rosa_rugosa	Rorug02G0255200
rosa_samantha	Rh3AG072100 Rh3BG074000 Rh3BG322000 Rh5AG212100 Rh5BG211300 Rh7CG103800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	382
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	2 cut(s)	360, 378
AcyI	GRCGYC	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	130, 257
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Alw26I	GTCTC	3 cut(s)	26, 187, 250
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	272, 293
ApoI	RAATTY	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	382
BbvI	GCAGC	2 cut(s)	259, 305
BccI	CCATC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	1 cut(s)	160
BcoDI	GTCTC	3 cut(s)	26, 187, 250
BfoI	RGCGCY	1 cut(s)	386
BisI	GCNGC	2 cut(s)	273, 294
BlsI	GCNGC	2 cut(s)	274, 295
Bme1390I	CCNGG	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	267
BpuEI	CTTGAG	2 cut(s)	12, 105
BsaHI	GRCGYC	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	7
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	196, 438
BseRI	GAGGAG	2 cut(s)	26, 329
BseXI	GCAGC	2 cut(s)	259, 305
BseYI	CCCAGC	1 cut(s)	289
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	382
BsmAI	GTCTC	3 cut(s)	26, 187, 250
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	48, 87, 250
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	195, 439
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	3 cut(s)	48, 87, 250
BssNI	GRCGYC	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	306, 336
BstACI	GRCGYC	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	4 cut(s)	152, 182, 228, 447
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	246
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	3 cut(s)	51, 90, 253
BstMAI	GTCTC	3 cut(s)	26, 187, 250
BstMBI	GATC	3 cut(s)	48, 87, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 389
BstNI	CCWGG	1 cut(s)	160
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	259, 305
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	7
BtgZI	GCGATG	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	369
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	368
CviJI	RGCY	4 cut(s)	5, 158, 272, 296
CviKI_1	RGCY	4 cut(s)	5, 158, 272, 296
DdeI	CTNAG	4 cut(s)	152, 182, 228, 447
DinI	GGCGCC	1 cut(s)	384
DpnI	GATC	3 cut(s)	50, 89, 252
DpnII	GATC	3 cut(s)	48, 87, 250
Eam1104I	CTCTTC	2 cut(s)	306, 336
EarI	CTCTTC	2 cut(s)	306, 336
EciI	GGCGGA	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	360, 378
EcoRII	CCWGG	1 cut(s)	158
EcoT22I	ATGCAT	1 cut(s)	369
EgeI	GGCGCC	1 cut(s)	384
EheI	GGCGCC	1 cut(s)	384
FaeI	CATG	1 cut(s)	371
FaiI	YATR	3 cut(s)	71, 139, 369
FatI	CATG	1 cut(s)	367
Fnu4HI	GCNGC	2 cut(s)	273, 294
FokI	GGATG	1 cut(s)	253
Fsp4HI	GCNGC	2 cut(s)	273, 294
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	2 cut(s)	273, 294
GsaI	CCCAGC	1 cut(s)	293
GsuI	CTGGAG	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	386
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	385
Hin1I	GRCGYC	1 cut(s)	383
Hin1II	CATG	1 cut(s)	371
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HinfI	GANTC	1 cut(s)	347
Hpy188I	TCNGA	2 cut(s)	185, 250
Hpy188III	TCNNGA	7 cut(s)	29, 112, 122, 130, 254, 284, 351
HpyAV	CCTTC	1 cut(s)	421
HpyCH4IV	ACGT	3 cut(s)	220, 358, 470
HpyCH4V	TGCA	1 cut(s)	367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 389
HpyF3I	CTNAG	4 cut(s)	152, 182, 228, 447
HpySE526I	ACGT	3 cut(s)	220, 358, 470
Hsp92I	GRCGYC	1 cut(s)	383
Hsp92II	CATG	1 cut(s)	371
HspAI	GCGC	1 cut(s)	383
KasI	GGCGCC	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	48, 87, 250
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	6 cut(s)	69, 125, 145, 172, 297, 303
Lsp1109I	GCAGC	2 cut(s)	259, 305
MaeII	ACGT	3 cut(s)	220, 358, 470
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	3 cut(s)	50, 89, 252
MboI	GATC	3 cut(s)	48, 87, 250
MboII	GAAGA	6 cut(s)	43, 269, 320, 323, 353, 468
MluCI	AATT	2 cut(s)	164, 321
Mly113I	GGCGCC	1 cut(s)	383
MnlI	CCTC	5 cut(s)	47, 52, 93, 307, 337
Mph1103I	ATGCAT	1 cut(s)	369
MseI	TTAA	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	278, 389
NarI	GGCGCC	1 cut(s)	383
NdeII	GATC	3 cut(s)	48, 87, 250
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	1 cut(s)	384
NsiI	ATGCAT	1 cut(s)	369
NspI	RCATGY	1 cut(s)	371
PaeI	GCATGC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	274, 295
PluTI	GGCGCC	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	273, 294
Sau3AI	GATC	3 cut(s)	48, 87, 250
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	4 cut(s)	223, 274, 361, 473
SfoI	GGCGCC	1 cut(s)	384
SmlI	CTYRAG	2 cut(s)	27, 120
SmoI	CTYRAG	2 cut(s)	27, 120
SphI	GCATGC	1 cut(s)	371
Sse9I	AATT	2 cut(s)	164, 321
SsiI	CCGC	1 cut(s)	57
SspDI	GGCGCC	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	158
TaiI	ACGT	3 cut(s)	223, 361, 473
TaqI	TCGA	3 cut(s)	90, 142, 350
TasI	AATT	2 cut(s)	164, 321
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseI	GCWGC	2 cut(s)	272, 293
TspGWI	ACGGA	1 cut(s)	24
XapI	RAATTY	1 cut(s)	321
XceI	RCATGY	1 cut(s)	371
Zsp2I	ATGCAT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.