Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015747

Physical Location & Seq

Genomic Coordinates Forward (+)

55969970 .. 55970766

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019721

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGTCTCTGATCTTGAAGCAAGAGAACGAGCTGCCTTTGCTCCAGACCCAGCAGCCACAAAAAGAGAAGAAGAGGACAAAATTTTTAGGAAACTTGCTGAAGAGGTTTCGAGAATACGTCCAATGCATGGGAGTAAAAGGGCGCCTACTGCTTCAGTTCCCAAAAAAGAGAATGGGAGAGTTGGGAAGGAGAGTGTGGGTGGTGCTGAGTTGGGAAGAATAGAAAAAACACTATATACTACTCGTCACCTACGTCTGCTGGTGCTGAATGCATTGATCTTAATTGTACTTGGGTGGAGCAATGCAGCCTTAGTGCATTGTGATCCATATCACCTGCCACTGTGGGGTACCCTATCAGTTTCTTCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

124

Amino Acids

13.6

Weight (kDa)

9.3

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015747)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0493811
rosa_laevigata	RLG00000012914 RLG00000019721 RLG00000022619 RLG00000022927 RLG00000025063 RLG00000036784
rosa_multiflora	Rmu_sc0001035.1_g000033 Rmu_sc0019527.1_g000001
rosa_rugosa	Rorug02G0255200
rosa_samantha	Rh3AG072100 Rh3BG074000 Rh3BG322000 Rh5AG212100 Rh5BG211300 Rh7CG103800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	342
Acc36I	ACCTGC	1 cut(s)	342
Acc65I	GGTACC	1 cut(s)	347
AccB1I	GGYRCC	2 cut(s)	142, 347
AccB7I	CCANNNNNTGG	1 cut(s)	128
AclWI	GGATC	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	81
AcuI	CTGAAG	2 cut(s)	120, 138
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	2 cut(s)	288, 349
AfiI	CCNNNNNNNGG	2 cut(s)	128, 344
AgsI	TTSAA	1 cut(s)	17
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	1 cut(s)	317
ApeKI	GCWGC	3 cut(s)	32, 53, 305
ApoI	RAATTY	1 cut(s)	81
Asp718I	GGTACC	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	239, 323
BanI	GGYRCC	2 cut(s)	142, 347
BbvI	GCAGC	3 cut(s)	19, 65, 317
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	1 cut(s)	370
BfoI	RGCGCY	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	342
BisI	GCNGC	3 cut(s)	33, 54, 306
BlsI	GCNGC	3 cut(s)	34, 55, 307
BmiI	GGNNCC	2 cut(s)	144, 349
BpmI	CTGGAG	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 344
Bse3DI	GCAATG	1 cut(s)	307
Bse8I	GATNNNNATC	1 cut(s)	327
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	128, 344
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	198
BseXI	GCAGC	3 cut(s)	19, 65, 317
BseYI	CCCAGC	1 cut(s)	49
BshNI	GGYRCC	2 cut(s)	142, 347
BslI	CCNNNNNNNGG	2 cut(s)	128, 344
BsmAI	GTCTC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	274
Bso31I	GGTCTC	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	10, 276, 322
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	144, 349
BspMI	ACCTGC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	317
BspT107I	GGYRCC	2 cut(s)	142, 347
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	307
BssMI	GATC	3 cut(s)	10, 276, 322
BssNI	GRCGYC	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	2 cut(s)	66, 96
BstACI	GRCGYC	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	207, 310
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	3 cut(s)	13, 279, 325
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	3 cut(s)	10, 276, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 149
BstV1I	GCAGC	3 cut(s)	19, 65, 317
BtsIMutI	CAGTG	1 cut(s)	338
BveI	ACCTGC	1 cut(s)	342
CfoI	GCGC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	287, 348
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	3 cut(s)	32, 56, 308
CviKI_1	RGCY	3 cut(s)	32, 56, 308
CviQI	GTAC	2 cut(s)	287, 348
DdeI	CTNAG	2 cut(s)	207, 310
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	3 cut(s)	12, 278, 324
DpnII	GATC	3 cut(s)	10, 276, 322
Eam1104I	CTCTTC	2 cut(s)	66, 96
EarI	CTCTTC	2 cut(s)	66, 96
Eco31I	GGTCTC	1 cut(s)	10
Eco57I	CTGAAG	2 cut(s)	120, 138
EcoT22I	ATGCAT	2 cut(s)	129, 274
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
FaeI	CATG	1 cut(s)	131
FaiI	YATR	4 cut(s)	129, 235, 237, 328
FatI	CATG	1 cut(s)	127
Fnu4HI	GCNGC	3 cut(s)	33, 54, 306
Fsp4HI	GCNGC	3 cut(s)	33, 54, 306
FspBI	CTAG	1 cut(s)	370
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	3 cut(s)	33, 54, 306
GsaI	CCCAGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	146
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HphI	GGTGA	2 cut(s)	239, 323
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	3 cut(s)	14, 44, 111
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	2 cut(s)	118, 253
HpyCH4V	TGCA	4 cut(s)	127, 272, 305, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 149
HpyF3I	CTNAG	2 cut(s)	207, 310
HpySE526I	ACGT	2 cut(s)	118, 253
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	143
KasI	GGCGCC	1 cut(s)	142
KpnI	GGTACC	1 cut(s)	351
Kzo9I	GATC	3 cut(s)	10, 276, 322
LmnI	GCTCC	2 cut(s)	46, 297
LpnPI	CCDG	4 cut(s)	57, 63, 245, 347
Lsp1109I	GCAGC	3 cut(s)	19, 65, 317
MaeI	CTAG	1 cut(s)	370
MaeII	ACGT	2 cut(s)	118, 253
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	3 cut(s)	12, 278, 324
MboI	GATC	3 cut(s)	10, 276, 322
MboII	GAAGA	5 cut(s)	80, 83, 113, 228, 354
MluCI	AATT	2 cut(s)	81, 282
Mly113I	GGCGCC	1 cut(s)	143
MnlI	CCTC	2 cut(s)	67, 97
Mph1103I	ATGCAT	2 cut(s)	129, 274
MseI	TTAA	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	274
MwoI	GCNNNNNNNGC	2 cut(s)	38, 149
NarI	GGCGCC	1 cut(s)	143
NdeII	GATC	3 cut(s)	10, 276, 322
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	2 cut(s)	144, 349
NmuCI	GTSAC	1 cut(s)	245
NsiI	ATGCAT	2 cut(s)	129, 274
PaqCI	CACCTGC	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	250
PctI	GAATGC	1 cut(s)	274
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	34, 55, 307
PluTI	GGCGCC	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	144, 349
RsaI	GTAC	2 cut(s)	288, 349
RsaNI	GTAC	2 cut(s)	287, 348
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	3 cut(s)	33, 54, 306
Sau3AI	GATC	3 cut(s)	10, 276, 322
SetI	ASST	6 cut(s)	34, 108, 121, 252, 256, 336
SfoI	GGCGCC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	81, 282
SspDI	GGCGCC	1 cut(s)	142
SspMI	CTAG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	2 cut(s)	121, 256
TaqI	TCGA	1 cut(s)	110
TasI	AATT	2 cut(s)	81, 282
TatI	WGTACW	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	3 cut(s)	32, 53, 305
Tsp45I	GTSAC	1 cut(s)	245
TspRI	CASTG	1 cut(s)	345
Van91I	CCANNNNNTGG	1 cut(s)	128
XapI	RAATTY	1 cut(s)	81
XspI	CTAG	1 cut(s)	370
Zsp2I	ATGCAT	2 cut(s)	129, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.