RchiOBHm_Chr4g0421771

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0011611
Physical Location & Seq
Reverse (-)
47426285 .. 47427054
770 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39140

Sequence Viewer

Length: 231 bp
ATGCGCCAATTGGAGTTGAAGCTTTATGTACCTGGTTCACATCAAATTAAACCACTGGCAATATTCCTCAGAGACTATGTGAACATGATTGCTGGGAAGTATCCTTTCTGGAATCGCACACATGGGACAGATCATTTTCTTGTTGCTTGCCATGACTGGCCTATAGCTGTTTCATATGAAGAGCAACATATACAAGTTCATGCAGCTGTTATACAGTTGTTTCATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

76

Amino Acids

8.9

Weight (kDa)

7.06

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 18 - 64 3.9e-10 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 30
AgsI TTSAA 1 cut(s) 19
AjnI CCWGG 1 cut(s) 31
AluBI AGCT 3 cut(s) 22, 167, 206
AluI AGCT 3 cut(s) 22, 167, 206
Alw26I GTCTC 1 cut(s) 66
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 203
AspLEI GCGC 1 cut(s) 6
BbvI GCAGC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 33
BciVI GTATCC 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 162
BfuI GTATCC 1 cut(s) 111
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 33
Bse1I ACTGG 2 cut(s) 60, 161
BseBI CCWGG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 60, 161
BseXI GCAGC 1 cut(s) 215
BseYI CCCAGC 1 cut(s) 92
BshFI GGCC 1 cut(s) 160
BslFI GGGAC 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 160
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 81
BspQI GCTCTTC 1 cut(s) 174
BsrI ACTGG 2 cut(s) 60, 161
BssMI GATC 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 216
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 68
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 1 cut(s) 130
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 215
BsuI GTATCC 1 cut(s) 111
BsuRI GGCC 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 1 cut(s) 6
CsiI ACCWGGT 1 cut(s) 31
Csp6I GTAC 1 cut(s) 29
CviAII CATG 5 cut(s) 85, 122, 152, 200, 224
CviJI RGCY 4 cut(s) 22, 160, 167, 206
CviKI_1 RGCY 4 cut(s) 22, 160, 167, 206
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 1 cut(s) 68
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 31
FaeI CATG 5 cut(s) 88, 125, 155, 203, 227
FaqI GGGAC 1 cut(s) 139
FatI CATG 5 cut(s) 84, 121, 151, 199, 223
FauNDI CATATG 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 204
GsaI CCCAGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 160
HhaI GCGC 1 cut(s) 6
Hin1II CATG 5 cut(s) 88, 125, 155, 203, 227
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 38, 82
Hpy188I TCNGA 1 cut(s) 71
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 2 cut(s) 38, 82
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 68
Hsp92II CATG 5 cut(s) 88, 125, 155, 203, 227
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 1 cut(s) 130
LguI GCTCTTC 1 cut(s) 174
LpnPI CCDG 6 cut(s) 18, 41, 45, 78, 94, 142
Lsp1109I GCAGC 1 cut(s) 215
MabI ACCWGGT 1 cut(s) 31
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 191
MfeI CAATTG 1 cut(s) 8
MluCI AATT 2 cut(s) 8, 45
MnlI CCTC 1 cut(s) 77
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 33
MunI CAATTG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 33
NdeI CATATG 1 cut(s) 175
NdeII GATC 1 cut(s) 130
NlaIII CATG 5 cut(s) 88, 125, 155, 203, 227
PciSI GCTCTTC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 31
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 33
SetI ASST 4 cut(s) 24, 34, 169, 208
SexAI ACCWGGT 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 162
Sse9I AATT 2 cut(s) 8, 45
SspI AATATT 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 216
TasI AATT 2 cut(s) 8, 45
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 60
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 4 cut(s) 162, 188, 192, 212
TspRI CASTG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.