Rroxscaffold_5G00341190

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011611
Physical Location & Seq
Reverse (-)
9693820 .. 9699641
5822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00341190.1

Sequence Viewer

Length: 801 bp
ATGGATCGAAGCCACCCCGGCCTCCGCCGACTCCGACCCGGTCGGAAAACATGTTTTCCGGCGTCCCTCGCCGACCCACCCCATTTTCGTGATCTCCTCCTCGTGCGATCATCCCTATGCACTTCTGAGGCAATCACGGCTATTAAGGAGCAAGAGAAGCAAATTAACGATTTTAGACAACATTGGTGGGATTATAAGACCTTCAAGATTGACGTTGTTATTGGGTCCACCGAGCTCCGGCAAGACGACGCTACTATTGGGAGTATTGGCTCTCGCCGGACGCCTTGGAACTGGTCTTCAGGTAGTGGTTTATCTTGCATACTCATGACCAAGGGATCTTACTGGCAAATCAAAGCTCCCACTAATAACTTTGATCCTGTAAACAACATTGGGGAAGGCAGTTTTGGTTGTGTCGACAAGGTCTATCTAAATTCATGGACTGCAATTTACGTACCTTTGGACAATGTGGGAACGTGGAATCATATCATGAAGACCAATGCTGTGATAAGGGTTCTCTCATGCAATGTAATTTGGAATCAAGGATGGTTCATGAGGTTGATGGAGGGAAACAGGCAATTTGTCACAAGAGACCCAGAAAAGGCTCACTTATTTTATCTTCCTTACAGCATGCGCCAATTGGAGTTGAAGCTTTATGTACCTGGTTCACATCAAATTAAACCACTGGCAATATTCCTCAGAGACTATGTGAACATGATTGCTGGGAAGTATCCTTTCTGGAATCGCACACATGGGACAGATCATTTTCTTGTTGCTTGCCATGACTGGGTTGGTAATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

266

Amino Acids

30.72

Weight (kDa)

9.23

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 174 - 262 6.5e-16 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AccI GTMKAC 1 cut(s) 414
AciI CCGC 1 cut(s) 25
AclWI GGATC 3 cut(s) 12, 343, 368
AcsI RAATTY 1 cut(s) 430
AcuI CTGAAG 1 cut(s) 282
AcyI GRCGYC 2 cut(s) 62, 281
AfaI GTAC 2 cut(s) 453, 657
AfiI CCNNNNNNNGG 3 cut(s) 237, 598, 784
AflIII ACRYGT 1 cut(s) 50
AgsI TTSAA 2 cut(s) 205, 646
AjnI CCWGG 1 cut(s) 658
AjuI GAANNNNNNNTTGG 2 cut(s) 387, 419
AluBI AGCT 3 cut(s) 235, 356, 649
AluI AGCT 3 cut(s) 235, 356, 649
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 2 cut(s) 582, 693
AlwI GGATC 3 cut(s) 12, 343, 368
AoxI GGCC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 430
AspLEI GCGC 1 cut(s) 633
AspS9I GGNCC 1 cut(s) 225
AsuC2I CCSGG 2 cut(s) 18, 39
AvaII GGWCC 1 cut(s) 225
BanII GRGCYC 1 cut(s) 237
BauI CACGAG 1 cut(s) 101
BbsI GAAGAC 2 cut(s) 288, 497
Bbv12I GWGCWC 1 cut(s) 237
BccI CCATC 2 cut(s) 537, 553
BceAI ACGGC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 660
BciVI GTATCC 1 cut(s) 738
BcnI CCSGG 2 cut(s) 18, 39
BcoDI GTCTC 2 cut(s) 582, 693
BfuI GTATCC 1 cut(s) 738
BglI GCCNNNNNGGC 1 cut(s) 18
Bme1390I CCNGG 3 cut(s) 18, 39, 660
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 3 cut(s) 18, 39, 660
BmrI ACTGGG 1 cut(s) 793
BmuI ACTGGG 1 cut(s) 793
BpiI GAAGAC 2 cut(s) 288, 497
BpuMI CCSGG 2 cut(s) 18, 39
BsaAI YACGTR 1 cut(s) 451
BsaHI GRCGYC 2 cut(s) 62, 281
BsaI GGTCTC 1 cut(s) 582
BsaJI CCNNGG 3 cut(s) 16, 284, 330
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 598, 784
Bse1I ACTGG 4 cut(s) 296, 347, 687, 788
Bse3DI GCAATG 1 cut(s) 529
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 3 cut(s) 16, 284, 330
BseGI GGATG 2 cut(s) 110, 548
BseLI CCNNNNNNNGG 3 cut(s) 237, 598, 784
BseMI GCAATG 1 cut(s) 529
BseMII CTCAG 2 cut(s) 117, 709
BseNI ACTGG 4 cut(s) 296, 347, 687, 788
BseRI GAGGAG 2 cut(s) 86, 89
BseYI CCCAGC 1 cut(s) 719
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 5 cut(s) 18, 39, 59, 238, 277
BslFI GGGAC 2 cut(s) 49, 766
BslI CCNNNNNNNGG 3 cut(s) 237, 598, 784
BsmAI GTCTC 2 cut(s) 582, 693
BsmFI GGGAC 2 cut(s) 49, 766
BsnI GGCC 1 cut(s) 21
Bso31I GGTCTC 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 6 cut(s) 4, 91, 107, 335, 373, 757
BspACI CCGC 1 cut(s) 25
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 2 cut(s) 118, 708
BspHI TCATGA 3 cut(s) 324, 486, 549
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 3 cut(s) 12, 343, 368
BspTNI GGTCTC 1 cut(s) 582
BsrDI GCAATG 1 cut(s) 529
BsrI ACTGG 4 cut(s) 296, 347, 687, 788
BssECI CCNNGG 3 cut(s) 16, 284, 330
BssMI GATC 6 cut(s) 4, 91, 107, 335, 373, 757
BssNI GRCGYC 2 cut(s) 62, 281
BssSI CACGAG 1 cut(s) 101
BssT1I CCWWGG 2 cut(s) 284, 330
Bst2BI CACGAG 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 660
BstACI GRCGYC 2 cut(s) 62, 281
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 2 cut(s) 629, 775
BstDEI CTNAG 2 cut(s) 126, 695
BstF5I GGATG 2 cut(s) 110, 548
BstHHI GCGC 1 cut(s) 633
BstKTI GATC 6 cut(s) 7, 94, 110, 338, 376, 760
BstMAI GTCTC 2 cut(s) 582, 693
BstMBI GATC 6 cut(s) 4, 91, 107, 335, 373, 757
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 4 cut(s) 18, 68, 137, 157
BstNI CCWGG 1 cut(s) 660
BstNSI RCATGY 2 cut(s) 54, 631
BstSCI CCNGG 3 cut(s) 16, 37, 658
BstSNI TACGTA 1 cut(s) 451
BstV2I GAAGAC 2 cut(s) 288, 497
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
BsuI GTATCC 1 cut(s) 738
BsuRI GGCC 1 cut(s) 21
BtsCI GGATG 2 cut(s) 110, 548
BtsIMutI CAGTG 1 cut(s) 680
Cac8I GCNNGC 2 cut(s) 629, 775
CciI TCATGA 3 cut(s) 324, 486, 549
CfoI GCGC 1 cut(s) 633
Cfr13I GGNCC 1 cut(s) 225
CseI GACGC 3 cut(s) 51, 257, 289
CsiI ACCWGGT 1 cut(s) 658
Csp6I GTAC 2 cut(s) 452, 656
CspCI CAANNNNNGTGG 2 cut(s) 167, 202
CviJI RGCY 8 cut(s) 12, 21, 140, 235, 270, 356, 602, 649
CviKI_1 RGCY 8 cut(s) 12, 21, 140, 235, 270, 356, 602, 649
CviQI GTAC 2 cut(s) 452, 656
DdeI CTNAG 2 cut(s) 126, 695
DpnI GATC 6 cut(s) 6, 93, 109, 337, 375, 759
DpnII GATC 6 cut(s) 4, 91, 107, 335, 373, 757
EciI GGCGGA 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 235
Eco105I TACGTA 1 cut(s) 451
Eco130I CCWWGG 2 cut(s) 284, 330
Eco24I GRGCYC 1 cut(s) 237
Eco31I GGTCTC 1 cut(s) 582
Eco47I GGWCC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 282
EcoICRI GAGCTC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 658
EcoT14I CCWWGG 2 cut(s) 284, 330
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 2 cut(s) 284, 330
FalI AAGNNNNNCTT 2 cut(s) 590, 622
FaqI GGGAC 2 cut(s) 49, 766
FblI GTMKAC 1 cut(s) 414
FokI GGATG 2 cut(s) 97, 555
FriOI GRGCYC 1 cut(s) 237
GlaI GCGC 1 cut(s) 632
GsaI CCCAGC 1 cut(s) 723
HaeIII GGCC 1 cut(s) 21
HapII CCGG 5 cut(s) 18, 39, 59, 238, 277
HgaI GACGC 3 cut(s) 51, 257, 289
HhaI GCGC 1 cut(s) 633
Hin1I GRCGYC 2 cut(s) 62, 281
Hin6I GCGC 1 cut(s) 631
HinP1I GCGC 1 cut(s) 631
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 4 cut(s) 30, 478, 535, 739
HpaII CCGG 5 cut(s) 18, 39, 59, 238, 277
Hpy166II GTNNAC 5 cut(s) 228, 382, 415, 665, 709
Hpy188I TCNGA 4 cut(s) 35, 45, 127, 698
Hpy188III TCNNGA 6 cut(s) 89, 205, 325, 487, 550, 736
Hpy8I GTNNAC 5 cut(s) 228, 382, 415, 665, 709
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 211, 389
HpyCH4IV ACGT 3 cut(s) 213, 450, 473
HpyCH4V TGCA 4 cut(s) 120, 318, 443, 522
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 68, 137, 157
HpyF3I CTNAG 2 cut(s) 126, 695
HpySE526I ACGT 3 cut(s) 213, 450, 473
Hsp92I GRCGYC 2 cut(s) 62, 281
HspAI GCGC 1 cut(s) 631
Kzo9I GATC 6 cut(s) 4, 91, 107, 335, 373, 757
LmnI GCTCC 3 cut(s) 148, 240, 361
MabI ACCWGGT 1 cut(s) 658
MaeII ACGT 3 cut(s) 213, 450, 473
MaeIII GTNAC 1 cut(s) 580
MalI GATC 6 cut(s) 6, 93, 109, 337, 375, 759
MboI GATC 6 cut(s) 4, 91, 107, 335, 373, 757
MboII GAAGA 3 cut(s) 288, 502, 608
MfeI CAATTG 1 cut(s) 635
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 7 cut(s) 162, 430, 444, 528, 575, 635, 672
MlyI GAGTC 1 cut(s) 24
MmeI TCCRAC 2 cut(s) 23, 58
MnlI CCTC 8 cut(s) 32, 77, 107, 110, 121, 546, 556, 704
MseI TTAA 3 cut(s) 144, 165, 675
MslI CAYNNNNRTG 3 cut(s) 87, 115, 323
MspI CCGG 5 cut(s) 18, 39, 59, 238, 277
MspR9I CCNGG 3 cut(s) 18, 39, 660
MunI CAATTG 1 cut(s) 635
MvaI CCWGG 1 cut(s) 660
MwoI GCNNNNNNNGC 4 cut(s) 18, 68, 137, 157
NciI CCSGG 2 cut(s) 18, 39
NdeII GATC 6 cut(s) 4, 91, 107, 335, 373, 757
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 580
NspI RCATGY 2 cut(s) 54, 631
PaeI GCATGC 1 cut(s) 631
PagI TCATGA 3 cut(s) 324, 486, 549
PciI ACATGT 1 cut(s) 50
PfeI GAWTC 3 cut(s) 478, 535, 739
PflFI GACNNNGTC 2 cut(s) 39, 419
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Ppu21I YACGTR 1 cut(s) 451
PscI ACATGT 1 cut(s) 50
PsiI TTATAA 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 658
PspFI CCCAGC 1 cut(s) 719
PspGI CCWGG 1 cut(s) 658
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 225
PsuI RGATCY 1 cut(s) 335
PsyI GACNNNGTC 2 cut(s) 39, 419
RsaI GTAC 2 cut(s) 453, 657
RsaNI GTAC 2 cut(s) 452, 656
RseI CAYNNNNRTG 3 cut(s) 87, 115, 323
SacI GAGCTC 1 cut(s) 237
SalI GTCGAC 1 cut(s) 413
SaqAI TTAA 3 cut(s) 144, 165, 675
Sau3AI GATC 6 cut(s) 4, 91, 107, 335, 373, 757
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 3 cut(s) 18, 39, 660
SduI GDGCHC 1 cut(s) 237
SexAI ACCWGGT 1 cut(s) 658
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 3 cut(s) 87, 115, 323
SnaBI TACGTA 1 cut(s) 451
SphI GCATGC 1 cut(s) 631
Sse9I AATT 7 cut(s) 162, 430, 444, 528, 575, 635, 672
SsiI CCGC 1 cut(s) 25
SspI AATATT 1 cut(s) 690
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 3 cut(s) 16, 37, 658
StyI CCWWGG 2 cut(s) 284, 330
TaiI ACGT 3 cut(s) 216, 453, 476
TaqI TCGA 2 cut(s) 7, 414
TasI AATT 7 cut(s) 162, 430, 444, 528, 575, 635, 672
TfiI GAWTC 3 cut(s) 478, 535, 739
Tru1I TTAA 3 cut(s) 144, 165, 675
Tru9I TTAA 3 cut(s) 144, 165, 675
TscAI CASTG 1 cut(s) 687
TseFI GTSAC 1 cut(s) 580
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 3 cut(s) 423, 503, 538
TspRI CASTG 1 cut(s) 687
Tth111I GACNNNGTC 2 cut(s) 39, 419
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 1 cut(s) 430
XceI RCATGY 2 cut(s) 54, 631
XcmI CCANNNNNNNNNTGG 1 cut(s) 785
XmiI GTMKAC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.