Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011611

Physical Location & Seq

Genomic Coordinates Reverse (-)

9249607 .. 9253066

Gene Structure 3460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG100200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAACAGTAATTGCTTAGTAACAGTGTCAGCTCAAGCCGAGCCGGTGATGGAAAAGACACGTTTTAATTTGAAAAAGGGTGGTGTAGACTCTGCATGCAGTCCCAGCGCTGCCTCACCTTCCCTGTCATACTCCAGCGAGCCATTAAAAAGTACTCAGATCAAGAGGAGCCTCACACGAAAAGGAAGACTGGCTTTTTTCAGCTTGAGGCAAATTAAAGCTCCCACTAATAACTTTGATCCTGTAAACAACATTGGGGAAGGCAGTTTTGGTTGTGTTGATAAGGTCTATCCAAATTCATGGACTGCAATTTACGTACCTTTGGACAATGTGGGAATGTGGAATGTGAGATATGAGAATTGGGCCCGACAGTACTTAGGCCAACAGTTCTATCTTCGTGTATACTTCTGTATAATCACATTTCACCTATTTAATTCTAAGATTCTAAGCACACCGCAGCTTTTGACAGAAGATGAAACTTCAGCATTCTCAAGTCTCCAATCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

169

Amino Acids

18.98

Weight (kDa)

9.1

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011611)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0324621 RchiOBHm_Chr2g0152761 RchiOBHm_Chr3g0465441 RchiOBHm_Chr4g0408921 RchiOBHm_Chr4g0421771 RchiOBHm_Chr4g0446141 RchiOBHm_Chr6g0251001 RchiOBHm_Chr6g0252321 RchiOBHm_Chr6g0309421
rosa_roxburghii	Rroxscaffold_2G00095150 Rroxscaffold_4G00316580 Rroxscaffold_5G00341190 Rroxscaffold_7G00199510
rosa_rugosa	Rorug07G0160600.1
rosa_samantha	Rh1DG034600 Rh4AG152500 Rh4CG161000 Rh5AG100200 Rh5BG423500
rosa_wichuraiana	Rw5G046940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	87, 402
AciI	CCGC	1 cut(s)	455
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	3 cut(s)	154, 318, 374
AfeI	AGCGCT	1 cut(s)	109
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	73
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	4 cut(s)	32, 204, 221, 460
AluI	AGCT	4 cut(s)	32, 204, 221, 460
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	233
Aor51HI	AGCGCT	1 cut(s)	109
AoxI	GGCC	2 cut(s)	363, 379
ApaI	GGGCCC	1 cut(s)	367
ApeKI	GCWGC	2 cut(s)	110, 457
ApoI	RAATTY	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	363, 364
AsuHPI	GGTGA	3 cut(s)	58, 108, 416
BaeGI	GKGCMC	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	97, 469
BccI	CCATC	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	500
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	2 cut(s)	111, 458
BlsI	GCNGC	2 cut(s)	112, 459
BmcAI	AGTACT	2 cut(s)	154, 374
BmgT120I	GGNCC	2 cut(s)	363, 364
BmiI	GGNNCC	2 cut(s)	170, 365
BpiI	GAAGAC	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	118
BpuEI	CTTGAG	3 cut(s)	18, 226, 475
BsaAI	YACGTR	1 cut(s)	316
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	181
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	97, 469
BseYI	CCCAGC	1 cut(s)	104
BshFI	GGCC	2 cut(s)	365, 381
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	365, 381
Bsp120I	GGGCCC	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	159, 238
BspACI	CCGC	1 cut(s)	455
BspANI	GGCC	2 cut(s)	365, 381
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	170, 365
BspPI	GGATC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	195
BssAI	RCCGGY	1 cut(s)	43
BssMI	GATC	2 cut(s)	159, 238
BssNAI	GTATAC	1 cut(s)	403
Bst1107I	GTATAC	1 cut(s)	403
Bst4CI	ACNGT	4 cut(s)	8, 25, 372, 387
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	97, 140
BstDEI	CTNAG	5 cut(s)	16, 156, 376, 438, 446
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	162, 241
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	2 cut(s)	159, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	367
BstSNI	TACGTA	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	97, 469
BstV2I	GAAGAC	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	300
BstZ17I	GTATAC	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	365, 381
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	97, 140
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	363, 364
Csp6I	GTAC	3 cut(s)	153, 317, 373
CviAII	CATG	2 cut(s)	96, 300
CviQI	GTAC	3 cut(s)	153, 317, 373
DdeI	CTNAG	5 cut(s)	16, 156, 376, 438, 446
DpnI	GATC	2 cut(s)	161, 240
DpnII	GATC	2 cut(s)	159, 238
Eco105I	TACGTA	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	367
Eco47III	AGCGCT	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	367
FaeI	CATG	2 cut(s)	99, 303
FaiI	YATR	6 cut(s)	97, 130, 301, 354, 403, 413
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	2 cut(s)	95, 299
FblI	GTMKAC	2 cut(s)	87, 402
Fnu4HI	GCNGC	2 cut(s)	111, 458
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	2 cut(s)	111, 458
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	2 cut(s)	111, 458
GsaI	CCCAGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	118
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	365, 381
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	99, 303
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	2 cut(s)	89, 442
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	3 cut(s)	58, 108, 416
Hpy166II	GTNNAC	3 cut(s)	88, 247, 403
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	3 cut(s)	88, 247, 403
HpyAV	CCTTC	2 cut(s)	129, 254
HpyCH4III	ACNGT	4 cut(s)	8, 25, 372, 387
HpyCH4IV	ACGT	2 cut(s)	61, 315
HpyCH4V	TGCA	3 cut(s)	95, 99, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	5 cut(s)	16, 156, 376, 438, 446
HpySE526I	ACGT	2 cut(s)	61, 315
Hsp92II	CATG	2 cut(s)	99, 303
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	159, 238
LmnI	GCTCC	2 cut(s)	168, 226
LpnPI	CCDG	6 cut(s)	57, 118, 137, 148, 176, 255
Lsp1109I	GCAGC	2 cut(s)	97, 469
MaeII	ACGT	2 cut(s)	61, 315
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	161, 240
MboI	GATC	2 cut(s)	159, 238
MboII	GAAGA	3 cut(s)	198, 386, 482
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	7 cut(s)	10, 67, 213, 295, 309, 358, 433
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	4 cut(s)	124, 159, 182, 201
MseI	TTAA	4 cut(s)	66, 146, 216, 432
MspI	CCGG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	485
MwoI	GCNNNNNNNGC	1 cut(s)	105
NdeII	GATC	2 cut(s)	159, 238
NlaIII	CATG	2 cut(s)	99, 303
NlaIV	GGNNCC	2 cut(s)	170, 365
NmeAIII	GCCGAG	1 cut(s)	64
NspI	RCATGY	1 cut(s)	99
PaeI	GCATGC	1 cut(s)	99
PctI	GAATGC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	442
PkrI	GCNGC	2 cut(s)	112, 459
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Ppu21I	YACGTR	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	170, 365
PspOMI	GGGCCC	1 cut(s)	363
PspPI	GGNCC	2 cut(s)	363, 364
RsaI	GTAC	3 cut(s)	154, 318, 374
RsaNI	GTAC	3 cut(s)	153, 317, 373
SaqAI	TTAA	4 cut(s)	66, 146, 216, 432
SatI	GCNGC	2 cut(s)	111, 458
Sau3AI	GATC	2 cut(s)	159, 238
Sau96I	GGNCC	2 cut(s)	363, 364
ScaI	AGTACT	2 cut(s)	154, 374
SchI	GAGTC	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	367
SmlI	CTYRAG	3 cut(s)	33, 205, 490
SmoI	CTYRAG	3 cut(s)	33, 205, 490
SnaBI	TACGTA	1 cut(s)	316
SphI	GCATGC	1 cut(s)	99
Sse9I	AATT	7 cut(s)	10, 67, 213, 295, 309, 358, 433
SsiI	CCGC	1 cut(s)	455
TaaI	ACNGT	4 cut(s)	8, 25, 372, 387
TaiI	ACGT	2 cut(s)	64, 318
TasI	AATT	7 cut(s)	10, 67, 213, 295, 309, 358, 433
TatI	WGTACW	2 cut(s)	152, 372
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	4 cut(s)	66, 146, 216, 432
Tru9I	TTAA	4 cut(s)	66, 146, 216, 432
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	2 cut(s)	110, 457
TspDTI	ATGAA	3 cut(s)	17, 288, 489
TspRI	CASTG	1 cut(s)	30
XapI	RAATTY	1 cut(s)	295
XceI	RCATGY	1 cut(s)	99
XmiI	GTMKAC	2 cut(s)	87, 402
ZrmI	AGTACT	2 cut(s)	154, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.