Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011611

Physical Location & Seq

Genomic Coordinates Forward (+)

66426072 .. 66426430

Gene Structure 359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41366

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGAGGAAGGGTGTAATAAATACTGGAAATTGTAATGCCGATGATGATGGGAGTCCTAATGAAAGTGATCGGAAAACGCTACGGCCTCCAAGTTGTTCCAAAACATTCAATGTTGAAACTAGCCATGCTGCAAAAATTCCCATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015030 GO:0016032 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016787 GO:0016788 GO:0018022 GO:0018193 GO:0018205 GO:0019048 GO:0019219 GO:0019222 GO:0019538 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0034968 GO:0035194 GO:0035197 GO:0035198 GO:0035821 GO:0036211 GO:0040029 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0060255 GO:0061647 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901363 GO:1901564 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

49

Amino Acids

5.31

Weight (kDa)

7.82

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011611)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0324621 RchiOBHm_Chr2g0152761 RchiOBHm_Chr3g0465441 RchiOBHm_Chr4g0408921 RchiOBHm_Chr4g0421771 RchiOBHm_Chr4g0446141 RchiOBHm_Chr6g0251001 RchiOBHm_Chr6g0252321 RchiOBHm_Chr6g0309421
rosa_roxburghii	Rroxscaffold_2G00095150 Rroxscaffold_4G00316580 Rroxscaffold_5G00341190 Rroxscaffold_7G00199510
rosa_rugosa	Rorug07G0160600.1
rosa_samantha	Rh1DG034600 Rh4AG152500 Rh4CG161000 Rh5AG100200 Rh5BG423500
rosa_wichuraiana	Rw5G046940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	109, 116
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	115
BshFI	GGCC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	67
BstKTI	GATC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	85
CviAII	CATG	2 cut(s)	125, 142
CviJI	RGCY	2 cut(s)	85, 123
CviKI_1	RGCY	2 cut(s)	85, 123
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
FaeI	CATG	2 cut(s)	128, 145
FaiI	YATR	2 cut(s)	126, 143
FatI	CATG	2 cut(s)	124, 141
Fnu4HI	GCNGC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	85
Hin1II	CATG	2 cut(s)	128, 145
HinfI	GANTC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	128, 145
Kzo9I	GATC	1 cut(s)	67
LpnPI	CCDG	1 cut(s)	9
Lsp1109I	GCAGC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	120
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MluCI	AATT	3 cut(s)	28, 135, 145
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	1 cut(s)	96
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	128, 145
PkrI	GCNGC	1 cut(s)	130
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	61
SgeI	CNNG	4 cut(s)	36, 102, 132, 137
Sse9I	AATT	3 cut(s)	28, 135, 145
SspMI	CTAG	1 cut(s)	120
TasI	AATT	3 cut(s)	28, 135, 145
TseI	GCWGC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	75
XapI	RAATTY	1 cut(s)	135
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.