Rh5BG423500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011611
Physical Location & Seq
Forward (+)
68384891 .. 68409918
25028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG423500.1

Sequence Viewer

Length: 318 bp
ATGGCGTCTTGGACCTGTACTCTTCACCGAATTAGAGTACTTCCGAAAGGTGACGACTTAAAAGCCACAGGCACTTCTGAGGCAATCACGGCTATTAAGGAGCAAGAGAAGAAAATTAACGATTTTAGACAACATTGGTGGGATTATAAGACCTTCAAGATTGACGTTGTTATTGGGTCCACCGAGCTCCGGCAAGACGACGCTACTATTGGCTCTCGCCGGACGCCTTGGAACTGGTCTTCAGATTCTCAATATTGCTTGCTTATGTATATGGTGCAACTTACATGGTTAGTCTGGTTACTAGTTAAGAAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.46

Weight (kDa)

8.95

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AcuI CTGAAG 1 cut(s) 225
AcyI GRCGYC 2 cut(s) 5, 224
AfaI GTAC 2 cut(s) 19, 39
AfiI CCNNNNNNNGG 1 cut(s) 189
AgsI TTSAA 1 cut(s) 157
AhlI ACTAGT 1 cut(s) 301
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw21I GWGCWC 1 cut(s) 189
AspS9I GGNCC 2 cut(s) 12, 177
AsuHPI GGTGA 2 cut(s) 17, 62
AvaII GGWCC 2 cut(s) 12, 177
BanII GRGCYC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 189
BceAI ACGGC 1 cut(s) 105
BcuI ACTAGT 1 cut(s) 301
BfaI CTAG 1 cut(s) 302
BmcAI AGTACT 1 cut(s) 39
Bme18I GGWCC 2 cut(s) 12, 177
BmgT120I GGNCC 2 cut(s) 12, 177
BmiI GGNNCC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 231
BsaHI GRCGYC 2 cut(s) 5, 224
BsaJI CCNNGG 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 2 cut(s) 190, 220
BslI CCNNNNNNNGG 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 227
BssNI GRCGYC 2 cut(s) 5, 224
BssT1I CCWWGG 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 2 cut(s) 5, 224
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 12, 177
CseI GACGC 2 cut(s) 209, 232
Csp6I GTAC 2 cut(s) 18, 38
CspCI CAANNNNNGTGG 2 cut(s) 119, 154
CviAII CATG 1 cut(s) 285
CviJI RGCY 4 cut(s) 65, 92, 187, 213
CviKI_1 RGCY 4 cut(s) 65, 92, 187, 213
CviQI GTAC 2 cut(s) 18, 38
DdeI CTNAG 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 189
Eco47I GGWCC 2 cut(s) 12, 177
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 227
FaeI CATG 1 cut(s) 288
FaiI YATR 5 cut(s) 147, 266, 270, 272, 286
FatI CATG 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 189
FspBI CTAG 1 cut(s) 302
HapII CCGG 2 cut(s) 190, 220
HgaI GACGC 2 cut(s) 209, 232
Hin1I GRCGYC 2 cut(s) 5, 224
Hin1II CATG 1 cut(s) 288
HinfI GANTC 1 cut(s) 245
HpaII CCGG 2 cut(s) 190, 220
HphI GGTGA 2 cut(s) 17, 62
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 3 cut(s) 45, 79, 244
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 180
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 2 cut(s) 5, 224
Hsp92II CATG 1 cut(s) 288
LmnI GCTCC 2 cut(s) 100, 192
LpnPI CCDG 6 cut(s) 28, 54, 203, 220, 233, 280
MaeI CTAG 1 cut(s) 302
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 50, 297
MboII GAAGA 3 cut(s) 14, 121, 231
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 2 cut(s) 30, 114
MnlI CCTC 1 cut(s) 73
MseI TTAA 5 cut(s) 59, 96, 117, 306, 316
MspI CCGG 2 cut(s) 190, 220
MwoI GCNNNNNNNGC 1 cut(s) 89
NlaIII CATG 1 cut(s) 288
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 245
PsiI TTATAA 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 2 cut(s) 12, 177
RsaI GTAC 2 cut(s) 19, 39
RsaNI GTAC 2 cut(s) 18, 38
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 5 cut(s) 59, 96, 117, 306, 316
Sau96I GGNCC 2 cut(s) 12, 177
ScaI AGTACT 1 cut(s) 39
SduI GDGCHC 1 cut(s) 189
SetI ASST 5 cut(s) 17, 52, 155, 168, 189
SinI GGWCC 2 cut(s) 12, 177
SpeI ACTAGT 1 cut(s) 301
Sse9I AATT 2 cut(s) 30, 114
SspI AATATT 1 cut(s) 254
SspMI CTAG 1 cut(s) 302
SstI GAGCTC 1 cut(s) 189
StyI CCWWGG 1 cut(s) 227
TaiI ACGT 1 cut(s) 168
TasI AATT 2 cut(s) 30, 114
TatI WGTACW 2 cut(s) 17, 37
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 5 cut(s) 59, 96, 117, 306, 316
Tru9I TTAA 5 cut(s) 59, 96, 117, 306, 316
TseFI GTSAC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 50
VpaK11BI GGWCC 2 cut(s) 12, 177
XspI CTAG 1 cut(s) 302
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.