Rw5G046940

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0011611
Physical Location & Seq
Forward (+)
81306225 .. 81306794
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G046940.1

Sequence Viewer

Length: 309 bp
ATGAGGTTGATGGAGGGAAACAGGCAATTTGTCACAAGAGACCCAGAAAAGGCTCACTTATTTTATCTTCCTTACAGCATGCGCCAATTGGAGTTGAAGCTTTATGTACCTGGTTCACATCAAATTAAACCACTGGCAATATTCCTCAGAGACTATGTGAACATGATTGCTGGGAAGTATCCTTTCTGGAATCGCACACATGGGACAGATCATTTTCTTGTTGCTTGCCATGACTGGCCTATAGCTGTTTCATATGAAGAGCAACATATACAAGTTCATGCAGCTGTTATACAGTTGTTTCATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

102

Amino Acids

12.08

Weight (kDa)

7.97

Isoelectric Point (pI)

31.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 7 - 90 9.5e-17 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 3 cut(s) 100, 245, 284
AluI AGCT 3 cut(s) 100, 245, 284
Alw26I GTCTC 2 cut(s) 33, 144
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 293
BccI CCATC 1 cut(s) 4
BciT130I CCWGG 1 cut(s) 111
BciVI GTATCC 1 cut(s) 189
BcoDI GTCTC 2 cut(s) 33, 144
BfmI CTRYAG 1 cut(s) 240
BfuI GTATCC 1 cut(s) 189
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse1I ACTGG 2 cut(s) 138, 239
BseBI CCWGG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 160
BseNI ACTGG 2 cut(s) 138, 239
BseXI GCAGC 1 cut(s) 293
BseYI CCCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 238
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 2 cut(s) 33, 144
BsmFI GGGAC 1 cut(s) 217
BsnI GGCC 1 cut(s) 238
Bso31I GGTCTC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 208
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 159
BspQI GCTCTTC 1 cut(s) 252
BspTNI GGTCTC 1 cut(s) 33
BsrI ACTGG 2 cut(s) 138, 239
BssMI GATC 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 80, 226
BstDEI CTNAG 1 cut(s) 146
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 2 cut(s) 33, 144
BstMBI GATC 1 cut(s) 208
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 293
BsuI GTATCC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 131
Cac8I GCNNGC 2 cut(s) 80, 226
CfoI GCGC 1 cut(s) 84
CsiI ACCWGGT 1 cut(s) 109
Csp6I GTAC 1 cut(s) 107
CviAII CATG 6 cut(s) 79, 163, 200, 230, 278, 302
CviJI RGCY 5 cut(s) 53, 100, 238, 245, 284
CviKI_1 RGCY 5 cut(s) 53, 100, 238, 245, 284
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 1 cut(s) 146
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 109
FaeI CATG 6 cut(s) 82, 166, 203, 233, 281, 305
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FaqI GGGAC 1 cut(s) 217
FatI CATG 6 cut(s) 78, 162, 199, 229, 277, 301
FauNDI CATATG 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 282
GlaI GCGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 282
GsaI CCCAGC 1 cut(s) 174
HaeIII GGCC 1 cut(s) 238
HhaI GCGC 1 cut(s) 84
Hin1II CATG 6 cut(s) 82, 166, 203, 233, 281, 305
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 1 cut(s) 190
Hpy166II GTNNAC 2 cut(s) 116, 160
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 2 cut(s) 116, 160
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4V TGCA 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 6 cut(s) 82, 166, 203, 233, 281, 305
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 1 cut(s) 208
LguI GCTCTTC 1 cut(s) 252
LpnPI CCDG 8 cut(s) 7, 57, 96, 119, 123, 156, 172, 220
Lsp1109I GCAGC 1 cut(s) 293
MabI ACCWGGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 2 cut(s) 59, 269
MfeI CAATTG 1 cut(s) 86
MluCI AATT 3 cut(s) 26, 86, 123
MnlI CCTC 2 cut(s) 7, 155
MseI TTAA 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 111
MunI CAATTG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 253
NdeII GATC 1 cut(s) 208
NlaIII CATG 6 cut(s) 82, 166, 203, 233, 281, 305
NmuCI GTSAC 1 cut(s) 31
NspI RCATGY 1 cut(s) 82
PaeI GCATGC 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 111
SetI ASST 5 cut(s) 8, 102, 112, 247, 286
SexAI ACCWGGT 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 240
SphI GCATGC 1 cut(s) 82
Sse9I AATT 3 cut(s) 26, 86, 123
SspI AATATT 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 294
TasI AATT 3 cut(s) 26, 86, 123
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 4 cut(s) 240, 266, 270, 290
TspRI CASTG 1 cut(s) 138
XceI RCATGY 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.