Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011611

Physical Location & Seq

Genomic Coordinates Forward (+)

38592404 .. 38592871

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG152500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTCCAAGAAGAGAAGGAGAATGTTGCCTTTTAGTCCCAGTGAAGATGCTGCAGTGAGATTGAAGCAAATGGCATCCCTGGCAACAGCTTTGACATCCACTGGAACTGATTTTAGTAATAAGCTTAGTTATAGGCCTGGTATGGCACCGAGGGAGGCCAACTGTCCATATTATGGACAAGGAGGCATGCAGACTTTCAACTTTCAAATTTACACTCATGTCGAAGCCGAGTATGCCAAGTCCGGAAGTCCTCATGCAAGAAATGCTCGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046976 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

91

Amino Acids

10.15

Weight (kDa)

10.0

Isoelectric Point (pI)

62.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011611)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0324621 RchiOBHm_Chr2g0152761 RchiOBHm_Chr3g0465441 RchiOBHm_Chr4g0408921 RchiOBHm_Chr4g0421771 RchiOBHm_Chr4g0446141 RchiOBHm_Chr6g0251001 RchiOBHm_Chr6g0252321 RchiOBHm_Chr6g0309421
rosa_roxburghii	Rroxscaffold_2G00095150 Rroxscaffold_4G00316580 Rroxscaffold_5G00341190 Rroxscaffold_7G00199510
rosa_rugosa	Rorug07G0160600.1
rosa_samantha	Rh1DG034600 Rh4AG152500 Rh4CG161000 Rh5AG100200 Rh5BG423500
rosa_wichuraiana	Rw5G046940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	173
AccIII	TCCGGA	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	64, 199, 206
AjnI	CCWGG	2 cut(s)	78, 136
AluBI	AGCT	2 cut(s)	89, 124
AluI	AGCT	2 cut(s)	89, 124
Aor13HI	TCCGGA	1 cut(s)	242
AoxI	GGCC	2 cut(s)	134, 156
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	80, 138
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	80, 138
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	2 cut(s)	80, 138
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	37, 83
BmuI	ACTGGG	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	78, 149
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	39, 106
BseAI	TCCGGA	1 cut(s)	242
BseBI	CCWGG	2 cut(s)	80, 138
BseDI	CCNNGG	2 cut(s)	78, 149
BseGI	GGATG	2 cut(s)	74, 95
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseNI	ACTGG	2 cut(s)	39, 106
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	2 cut(s)	136, 158
BshNI	GGYRCC	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	136, 158
Bsp13I	TCCGGA	1 cut(s)	242
BspANI	GGCC	2 cut(s)	136, 158
BspEI	TCCGGA	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	147
BspMAI	CTGCAG	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	39, 106
BssECI	CCNNGG	2 cut(s)	78, 149
Bst2UI	CCWGG	2 cut(s)	80, 138
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	74, 95
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 233, 263
BstNI	CCWGG	2 cut(s)	80, 138
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	2 cut(s)	78, 136
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	136, 158
BtsCI	GGATG	2 cut(s)	74, 95
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	3 cut(s)	46, 60, 99
Cac8I	GCNNGC	1 cut(s)	188
CviAII	CATG	3 cut(s)	187, 218, 254
CviJI	RGCY	5 cut(s)	89, 124, 136, 158, 227
CviKI_1	RGCY	5 cut(s)	89, 124, 136, 158, 227
DdeI	CTNAG	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco147I	AGGCCT	1 cut(s)	136
EcoRII	CCWGG	2 cut(s)	78, 136
FaeI	CATG	3 cut(s)	190, 221, 257
FaiI	YATR	8 cut(s)	132, 143, 169, 174, 188, 219, 234, 255
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	3 cut(s)	186, 217, 253
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	61, 82
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	136, 158
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	3 cut(s)	190, 221, 257
HindIII	AAGCTT	1 cut(s)	122
HpaII	CCGG	1 cut(s)	243
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	1 cut(s)	243
HpyAV	CCTTC	1 cut(s)	9
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	53, 190, 257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 233, 263
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	3 cut(s)	190, 221, 257
Kpn2I	TCCGGA	1 cut(s)	242
LpnPI	CCDG	7 cut(s)	52, 65, 87, 92, 123, 150, 256
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	2 cut(s)	37, 83
MboII	GAAGA	2 cut(s)	22, 56
MluCI	AATT	1 cut(s)	207
MnlI	CCTC	4 cut(s)	144, 148, 176, 261
MroI	TCCGGA	1 cut(s)	242
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	80, 138
MvaI	CCWGG	2 cut(s)	80, 138
MwoI	GCNNNNNNNGC	3 cut(s)	80, 233, 263
NlaIII	CATG	3 cut(s)	190, 221, 257
NlaIV	GGNNCC	1 cut(s)	147
NmeAIII	GCCGAG	1 cut(s)	253
NspI	RCATGY	1 cut(s)	190
PaeI	GCATGC	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	78, 136
PspGI	CCWGG	2 cut(s)	78, 136
PspN4I	GGNNCC	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	55
SatI	GCNGC	1 cut(s)	51
ScrFI	CCNGG	2 cut(s)	80, 138
SetI	ASST	2 cut(s)	91, 126
SfaNI	GCATC	2 cut(s)	37, 83
SfcI	CTRYAG	1 cut(s)	51
SphI	GCATGC	1 cut(s)	190
Sse9I	AATT	1 cut(s)	207
SseBI	AGGCCT	1 cut(s)	136
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	2 cut(s)	78, 136
TaaI	ACNGT	1 cut(s)	164
TaqI	TCGA	1 cut(s)	222
TasI	AATT	1 cut(s)	207
TscAI	CASTG	3 cut(s)	46, 60, 106
TseI	GCWGC	1 cut(s)	50
TspRI	CASTG	3 cut(s)	46, 60, 106
Van91I	CCANNNNNTGG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.