Rh1DG034600

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0011611
Physical Location & Seq
Reverse (-)
5138979 .. 5149642
10664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG034600.1

Sequence Viewer

Length: 474 bp
ATGCGCCAATTGGAGTTGAAGCTTTATGTACCTGGTTCACATCAAATTAAACCACTGGCAATATTCCTCAGAGACTATGTGAACATGATTGCTGGGAAGTATCCTTTCTGGAATCGCACACATGGGACAGATCATTTTCTTGTTGCTTGCCATGACTGGAGGCGAAGGAGAGCGAGTGGTTTGGTGATGTCCAAGAAGAGAAGGAGAATATTGCCTTTTAGTCCCAGTGAAGATGCTGCATTGAGATTGAAGCAAATGGCGTCCCTGGCAACAGCTTTGACATCCACTGGAACTGATTTTAGTAATAAGCTTAGTTATAGGCCTGGTATGGCACCGAGGGAGGCCAACTATCCAGATTATGAACAAGGAGGCATGCAGGATGATGGTCTGCATGATTTAAGTAAAATTGCTGCTTTTGATTTTGATGGATGTCTTGCAAATACTAGTGTTAGAAGGAATGACCGGCCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

157

Amino Acids

17.92

Weight (kDa)

9.77

Isoelectric Point (pI)

62.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 18 - 65 2.2e-09 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 331
AcoI YGGCCR 1 cut(s) 464
AcyI GRCGYC 1 cut(s) 260
AfaI GTAC 1 cut(s) 30
AgsI TTSAA 2 cut(s) 19, 250
AhlI ACTAGT 1 cut(s) 443
AjnI CCWGG 3 cut(s) 31, 264, 322
AluBI AGCT 3 cut(s) 22, 275, 310
AluI AGCT 3 cut(s) 22, 275, 310
Alw26I GTCTC 1 cut(s) 66
AoxI GGCC 3 cut(s) 320, 342, 464
ApeKI GCWGC 2 cut(s) 236, 410
AspLEI GCGC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 196
BanI GGYRCC 1 cut(s) 331
BbvI GCAGC 2 cut(s) 223, 397
BccI CCATC 2 cut(s) 377, 419
BciT130I CCWGG 3 cut(s) 33, 266, 324
BciVI GTATCC 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 66
BcuI ACTAGT 1 cut(s) 443
BfaI CTAG 1 cut(s) 444
BfuI GTATCC 1 cut(s) 111
BisI GCNGC 2 cut(s) 237, 411
BlsI GCNGC 2 cut(s) 238, 412
Bme1390I CCNGG 3 cut(s) 33, 266, 324
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 3 cut(s) 33, 266, 324
BmrI ACTGGG 1 cut(s) 219
BmsI GCATC 1 cut(s) 223
BmuI ACTGGG 1 cut(s) 219
BpmI CTGGAG 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 264, 335
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bse118I RCCGGY 1 cut(s) 462
Bse1I ACTGG 4 cut(s) 60, 161, 225, 292
BseBI CCWGG 3 cut(s) 33, 266, 324
BseDI CCNNGG 2 cut(s) 264, 335
BseGI GGATG 3 cut(s) 281, 385, 434
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 4 cut(s) 60, 161, 225, 292
BseXI GCAGC 2 cut(s) 223, 397
BseYI CCCAGC 1 cut(s) 92
BshFI GGCC 3 cut(s) 322, 344, 466
BshNI GGYRCC 1 cut(s) 331
BsiSI CCGG 1 cut(s) 463
BslFI GGGAC 3 cut(s) 139, 207, 247
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 3 cut(s) 139, 207, 247
BsnI GGCC 3 cut(s) 322, 344, 466
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 3 cut(s) 322, 344, 466
BspCNI CTCAG 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 462
BsrI ACTGG 4 cut(s) 60, 161, 225, 292
BssAI RCCGGY 1 cut(s) 462
BssECI CCNNGG 2 cut(s) 264, 335
BssMI GATC 1 cut(s) 130
BssNI GRCGYC 1 cut(s) 260
Bst2UI CCWGG 3 cut(s) 33, 266, 324
Bst6I CTCTTC 1 cut(s) 191
BstACI GRCGYC 1 cut(s) 260
BstC8I GCNNGC 2 cut(s) 148, 374
BstDEI CTNAG 2 cut(s) 68, 311
BstF5I GGATG 3 cut(s) 281, 385, 434
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 3 cut(s) 33, 266, 324
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 3 cut(s) 31, 264, 322
BstV1I GCAGC 2 cut(s) 223, 397
BsuI GTATCC 1 cut(s) 111
BsuRI GGCC 3 cut(s) 322, 344, 466
BtsCI GGATG 3 cut(s) 281, 385, 434
BtsIMutI CAGTG 3 cut(s) 53, 232, 285
Cac8I GCNNGC 2 cut(s) 148, 374
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 462
CseI GACGC 1 cut(s) 249
CsiI ACCWGGT 1 cut(s) 31
Csp6I GTAC 1 cut(s) 29
CviAII CATG 5 cut(s) 85, 122, 152, 373, 392
CviJI RGCY 6 cut(s) 22, 275, 310, 322, 344, 466
CviKI_1 RGCY 6 cut(s) 22, 275, 310, 322, 344, 466
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 2 cut(s) 68, 311
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 464
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco147I AGGCCT 1 cut(s) 322
EcoRII CCWGG 3 cut(s) 31, 264, 322
FaeI CATG 5 cut(s) 88, 125, 155, 376, 395
FaqI GGGAC 3 cut(s) 139, 207, 247
FatI CATG 5 cut(s) 84, 121, 151, 372, 391
Fnu4HI GCNGC 2 cut(s) 237, 411
FokI GGATG 3 cut(s) 268, 392, 441
Fsp4HI GCNGC 2 cut(s) 237, 411
FspBI CTAG 1 cut(s) 444
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 237, 411
GsaI CCCAGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 3 cut(s) 322, 344, 466
HapII CCGG 1 cut(s) 463
HgaI GACGC 1 cut(s) 249
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 260
Hin1II CATG 5 cut(s) 88, 125, 155, 376, 395
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HindIII AAGCTT 2 cut(s) 20, 308
HinfI GANTC 1 cut(s) 112
HpaII CCGG 1 cut(s) 463
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 38, 82
Hpy188I TCNGA 1 cut(s) 71
Hpy188III TCNNGA 2 cut(s) 109, 353
Hpy8I GTNNAC 2 cut(s) 38, 82
HpyAV CCTTC 3 cut(s) 159, 195, 447
HpyCH4V TGCA 4 cut(s) 239, 376, 391, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 2 cut(s) 68, 311
Hsp92I GRCGYC 1 cut(s) 260
Hsp92II CATG 5 cut(s) 88, 125, 155, 376, 395
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 1 cut(s) 130
Lsp1109I GCAGC 2 cut(s) 223, 397
LweI GCATC 1 cut(s) 223
MabI ACCWGGT 1 cut(s) 31
MaeI CTAG 1 cut(s) 444
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 2 cut(s) 208, 242
MfeI CAATTG 1 cut(s) 8
MluCI AATT 3 cut(s) 8, 45, 405
MnlI CCTC 5 cut(s) 77, 153, 330, 334, 362
MseI TTAA 2 cut(s) 48, 398
MspI CCGG 1 cut(s) 463
MspR9I CCNGG 3 cut(s) 33, 266, 324
MunI CAATTG 1 cut(s) 8
MvaI CCWGG 3 cut(s) 33, 266, 324
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeII GATC 1 cut(s) 130
NlaIII CATG 5 cut(s) 88, 125, 155, 376, 395
NlaIV GGNNCC 1 cut(s) 333
NspI RCATGY 1 cut(s) 376
PaeI GCATGC 1 cut(s) 376
PceI AGGCCT 1 cut(s) 322
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 2 cut(s) 238, 412
Psp6I CCWGG 3 cut(s) 31, 264, 322
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 3 cut(s) 31, 264, 322
PspN4I GGNNCC 1 cut(s) 333
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SaqAI TTAA 2 cut(s) 48, 398
SatI GCNGC 2 cut(s) 237, 411
Sau3AI GATC 1 cut(s) 130
ScrFI CCNGG 3 cut(s) 33, 266, 324
SetI ASST 4 cut(s) 24, 34, 277, 312
SexAI ACCWGGT 1 cut(s) 31
SfaNI GCATC 1 cut(s) 223
SpeI ACTAGT 1 cut(s) 443
SphI GCATGC 1 cut(s) 376
Sse9I AATT 3 cut(s) 8, 45, 405
SseBI AGGCCT 1 cut(s) 322
SspI AATATT 2 cut(s) 63, 210
SspMI CTAG 1 cut(s) 444
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 3 cut(s) 31, 264, 322
TasI AATT 3 cut(s) 8, 45, 405
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 2 cut(s) 48, 398
Tru9I TTAA 2 cut(s) 48, 398
TscAI CASTG 3 cut(s) 60, 232, 292
TseI GCWGC 2 cut(s) 236, 410
TspDTI ATGAA 1 cut(s) 375
TspRI CASTG 3 cut(s) 60, 232, 292
XceI RCATGY 1 cut(s) 376
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.