RchiOBHm_Chr4g0422061

aminotransferase ACS10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0008719
Physical Location & Seq
Reverse (-)
47740506 .. 47745901
5396 bp
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UTR
Exon/CDS
Intron
PRQ39166

Sequence Viewer

Length: 306 bp
ATGAGCGGTGCGGGTGAGCTTGGGATTAGTGGGATTGCTTGTTACCAGCCTTCTGATGGTTTAATGGAGCTGAAACTGGCTGTGGCAGGATTCATGTCTAAAGCCGTTGGAAATTCAGTTACCTACAACCCCTCACAAATTGTATTGACAGCTGGTGCAACCCCTGCAATTGAGATTCTAAGCTTCTGCCTAGCAGACAGTGGAACCGCATTTATTGTTCCGGCACCATATTACCCTGGTTTGGACAGAGATGTAAAGTGGCGAACTGGAGTGGAGATAATACCTGTTCCAGTACATTGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

101

Amino Acids

10.5

Weight (kDa)

4.75

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 11 - 98 8.2e-15 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 3 cut(s) 6, 11, 207
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 2 cut(s) 56, 241
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 4 cut(s) 19, 70, 152, 183
AluI AGCT 4 cut(s) 19, 70, 152, 183
ApoI RAATTY 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 26
BanI GGYRCC 1 cut(s) 223
BccI CCATC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 237
BfaI CTAG 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 237
BmiI GGNNCC 2 cut(s) 205, 225
BmrFI CCNGG 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 235
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 241
Bse1I ACTGG 3 cut(s) 81, 271, 290
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 235
BseLI CCNNNNNNNGG 2 cut(s) 56, 241
BseNI ACTGG 3 cut(s) 81, 271, 290
BshNI GGYRCC 1 cut(s) 223
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 56, 241
BspACI CCGC 3 cut(s) 6, 11, 207
BspLI GGNNCC 2 cut(s) 205, 225
BspT107I GGYRCC 1 cut(s) 223
BsrBI CCGCTC 1 cut(s) 6
BsrI ACTGG 3 cut(s) 81, 271, 290
BssECI CCNNGG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 164
BstDEI CTNAG 1 cut(s) 179
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 205
Csp6I GTAC 1 cut(s) 293
CviAII CATG 1 cut(s) 94
CviJI RGCY 7 cut(s) 19, 49, 70, 80, 104, 152, 183
CviKI_1 RGCY 7 cut(s) 19, 49, 70, 80, 104, 152, 183
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 235
FaeI CATG 1 cut(s) 97
FaiI YATR 2 cut(s) 95, 229
FatI CATG 1 cut(s) 93
FauI CCCGC 1 cut(s) 4
FspBI CTAG 1 cut(s) 191
GsuI CTGGAG 1 cut(s) 288
HapII CCGG 1 cut(s) 221
Hin1II CATG 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 2 cut(s) 90, 175
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 26
Hpy188I TCNGA 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 158, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 1 cut(s) 97
LmnI GCTCC 1 cut(s) 67
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 2 cut(s) 41, 118
MbiI CCGCTC 1 cut(s) 6
MfeI CAATTG 1 cut(s) 168
MluCI AATT 3 cut(s) 112, 138, 168
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 1 cut(s) 142
MseI TTAA 2 cut(s) 62, 304
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 237
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 164
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 2 cut(s) 205, 225
PfeI GAWTC 2 cut(s) 90, 175
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 205, 225
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 62, 304
ScrFI CCNGG 1 cut(s) 237
SetI ASST 6 cut(s) 21, 72, 125, 154, 185, 286
Sse9I AATT 3 cut(s) 112, 138, 168
SsiI CCGC 3 cut(s) 6, 11, 207
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 200
TasI AATT 3 cut(s) 112, 138, 168
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 2 cut(s) 90, 175
Tru1I TTAA 2 cut(s) 62, 304
Tru9I TTAA 2 cut(s) 62, 304
TscAI CASTG 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 82
TspRI CASTG 1 cut(s) 205
XapI RAATTY 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.