Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008719

Physical Location & Seq

Genomic Coordinates Reverse (-)

51725546 .. 51726206

Gene Structure 661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009368

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCCCGCACCGCCGAAGAAGACCTCGAGTCAAAGCTCGGTTTCGATCTATTCTCTAGGCTCGGCTGGTTTACTCACTTTCGCAACGGTAAATTGCTCTTCCATTTTTGCTGTTTCTATAGCTTGGATAATTTGGGATTTGAAATATGTAATCTGCGTTTCCAAGATCCGCCGTATTATGTCGGGTTGAGGAAGGTGGCGGAGGATCCGTACGACGAGTTGGGTAACCCGGATGGGGTTATTCAGCTAGGTTTGGATGAAAACATGAATGCAAAGGATGCAATACTGGGTGGTGAGGAGCTTGGGATTAGTGGGATTGCTTGTTACCAGCCTTCTGATGGTTTAATGGAGCTGAAACTGGTACTTCTTTTATACTCTCGAATCATTTCTTCTGTTTTCATGATTGTTCATTCGAATTGTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

142

Amino Acids

15.91

Weight (kDa)

4.63

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62960
fragaria_vesca	FvH4_5g00980
malus_domestica	MD00G1072200.v1.1 MD04G1076200.v1.1
prunus_persica	Prupe.5G083500_v2.0.a1
pyrus_communis	pycom04g06730
rosa_chinensis	RchiOBHm_Chr4g0422061 RchiOBHm_Chr5g0034791 RchiOBHm_Chr7g0200401
rosa_laevigata	RLG00000003729 RLG00000009368 RLG00000013085
rosa_roxburghii	Rroxscaffold_3G00256030
rosa_rugosa	Rorug07G0060200 Rorug07G0060200 Rorug07G0060200
rosa_samantha	Rh4BG116800 Rh7AG185300 Rh7BG188400 Rh7CG195600 Rh7DG189400
rosa_wichuraiana	Rw3G021860 Rw7G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	7, 12, 170, 200
AclWI	GGATC	3 cut(s)	161, 200, 213
AfaI	GTAC	2 cut(s)	212, 363
AfiI	CCNNNNNNNGG	2 cut(s)	235, 338
AgsI	TTSAA	1 cut(s)	143
AhdI	GACNNNNNGTC	1 cut(s)	28
AluBI	AGCT	5 cut(s)	37, 123, 247, 301, 352
AluI	AGCT	5 cut(s)	37, 123, 247, 301, 352
AlwI	GGATC	3 cut(s)	161, 200, 213
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	1 cut(s)	3
Asp700I	GAANNNNTTC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	305
AsuII	TTCGAA	1 cut(s)	413
AvaI	CYCGRG	1 cut(s)	26
BamHI	GGATCC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	27
BccI	CCATC	2 cut(s)	227, 332
BceAI	ACGGC	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	230
BfaI	CTAG	2 cut(s)	57, 248
BfmI	CTRYAG	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	230
BmeRI	GACNNNNNGTC	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	230
BmrI	ACTGGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	268
BmuI	ACTGGG	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 338
Bse1I	ACTGG	2 cut(s)	291, 363
BseGI	GGATG	3 cut(s)	238, 262, 283
BseLI	CCNNNNNNNGG	2 cut(s)	235, 338
BseNI	ACTGG	2 cut(s)	291, 363
BseRI	GAGGAG	1 cut(s)	311
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	230
BsiWI	CGTACG	1 cut(s)	210
BslI	CCNNNNNNNGG	2 cut(s)	235, 338
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	26
Bsp119I	TTCGAA	1 cut(s)	413
Bsp143I	GATC	3 cut(s)	46, 166, 205
BspACI	CCGC	4 cut(s)	7, 12, 170, 200
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	3 cut(s)	161, 200, 213
BspQI	GCTCTTC	1 cut(s)	104
BspT104I	TTCGAA	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	291, 363
BssMI	GATC	3 cut(s)	46, 166, 205
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	1 cut(s)	104
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	7
BstEII	GGTNACC	1 cut(s)	224
BstF5I	GGATG	3 cut(s)	238, 262, 283
BstKTI	GATC	3 cut(s)	49, 169, 208
BstMBI	GATC	3 cut(s)	46, 166, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 278
BstPI	GGTNACC	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	2 cut(s)	166, 205
BstYI	RGATCY	2 cut(s)	166, 205
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	3 cut(s)	238, 262, 283
Cac8I	GCNNGC	1 cut(s)	7
CciI	TCATGA	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	211, 362
CviAII	CATG	2 cut(s)	265, 400
CviJI	RGCY	9 cut(s)	5, 37, 61, 66, 123, 247, 301, 331, 352
CviKI_1	RGCY	9 cut(s)	5, 37, 61, 66, 123, 247, 301, 331, 352
CviQI	GTAC	2 cut(s)	211, 362
DpnI	GATC	3 cut(s)	48, 168, 207
DpnII	GATC	3 cut(s)	46, 166, 205
DriI	GACNNNNNGTC	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	104
Eam1105I	GACNNNNNGTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	2 cut(s)	159, 215
Eco88I	CYCGRG	1 cut(s)	26
Eco91I	GGTNACC	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	224
FaeI	CATG	2 cut(s)	268, 403
FaiI	YATR	6 cut(s)	120, 148, 180, 266, 373, 401
FatI	CATG	2 cut(s)	264, 399
FauI	CCCGC	1 cut(s)	14
FokI	GGATG	3 cut(s)	245, 269, 290
FspBI	CTAG	2 cut(s)	57, 248
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	2 cut(s)	268, 403
HinfI	GANTC	2 cut(s)	29, 381
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	2 cut(s)	378, 400
Hpy8I	GTNNAC	1 cut(s)	72
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	187, 342
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	2 cut(s)	272, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 278
Hsp92II	CATG	2 cut(s)	268, 403
Kzo9I	GATC	3 cut(s)	46, 166, 205
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	298, 349
LpnPI	CCDG	5 cut(s)	52, 243, 272, 341, 344
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	2 cut(s)	57, 248
MaeIII	GTNAC	2 cut(s)	224, 323
MalI	GATC	3 cut(s)	48, 168, 207
MboI	GATC	3 cut(s)	46, 166, 205
MboII	GAAGA	4 cut(s)	29, 32, 91, 381
MflI	RGATCY	2 cut(s)	166, 205
MluCI	AATT	3 cut(s)	92, 130, 415
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	4 cut(s)	35, 183, 196, 289
MroXI	GAANNNNTTC	1 cut(s)	385
MseI	TTAA	1 cut(s)	344
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	230
Mva1269I	GAATGC	1 cut(s)	274
MwoI	GCNNNNNNNGC	2 cut(s)	11, 278
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	3 cut(s)	46, 166, 205
NlaIII	CATG	2 cut(s)	268, 403
NlaIV	GGNNCC	1 cut(s)	207
NmeAIII	GCCGAG	1 cut(s)	42
NspV	TTCGAA	1 cut(s)	413
PaeR7I	CTCGAG	1 cut(s)	26
PagI	TCATGA	1 cut(s)	399
PciSI	GCTCTTC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PctI	GAATGC	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	381
Pfl23II	CGTACG	1 cut(s)	210
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PspEI	GGTNACC	1 cut(s)	224
PspLI	CGTACG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	26
PsuI	RGATCY	2 cut(s)	166, 205
RsaI	GTAC	2 cut(s)	212, 363
RsaNI	GTAC	2 cut(s)	211, 362
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	344
Sau3AI	GATC	3 cut(s)	46, 166, 205
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	8 cut(s)	27, 39, 125, 198, 249, 253, 303, 354
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	118
Sfr274I	CTCGAG	1 cut(s)	26
SfuI	TTCGAA	1 cut(s)	413
SlaI	CTCGAG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	3 cut(s)	92, 130, 415
SsiI	CCGC	4 cut(s)	7, 12, 170, 200
SspMI	CTAG	2 cut(s)	57, 248
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	4 cut(s)	27, 45, 379, 413
TasI	AATT	3 cut(s)	92, 130, 415
TfiI	GAWTC	1 cut(s)	381
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TspDTI	ATGAA	4 cut(s)	273, 281, 388, 398
TspGWI	ACGGA	1 cut(s)	198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XhoI	CTCGAG	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	2 cut(s)	57, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.