Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008719

Physical Location & Seq

Genomic Coordinates Forward (+)

26561704 .. 26562750

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G021860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTGGTCCCGTGGTCCGGTCGTCGGAGACTCATGGACCTCCAAGAAGCAGAAGAAGCTCACCCGCACCGCCGACGAAGCCCTCGAGTCAAAGCTCGGTTTCGATCTATTCTCCGAACGTGAAACTAGGCTCGACTTTCCCAACGGTGAGCCGCCGTATTATGTCGGGTTGATGAAGGTGCTGGAGGATCCGTACAATGAGTTGGGTAACCCGGATGGGGTTATTCAGCTGGGTTTGGATGAAAACACGAATGCAAAGGATGCAATACTGGGTGGTGAGGAGCTTGGGATTAGTGGGGTAAAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

102

Amino Acids

11.23

Weight (kDa)

4.6

Isoelectric Point (pI)

21.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62960
fragaria_vesca	FvH4_5g00980
malus_domestica	MD00G1072200.v1.1 MD04G1076200.v1.1
prunus_persica	Prupe.5G083500_v2.0.a1
pyrus_communis	pycom04g06730
rosa_chinensis	RchiOBHm_Chr4g0422061 RchiOBHm_Chr5g0034791 RchiOBHm_Chr7g0200401
rosa_laevigata	RLG00000003729 RLG00000009368 RLG00000013085
rosa_roxburghii	Rroxscaffold_3G00256030
rosa_rugosa	Rorug07G0060200 Rorug07G0060200 Rorug07G0060200
rosa_samantha	Rh4BG116800 Rh7AG185300 Rh7BG188400 Rh7CG195600 Rh7DG189400
rosa_wichuraiana	Rw3G021860 Rw7G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	64, 69, 152
AclWI	GGATC	2 cut(s)	182, 195
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	3 cut(s)	16, 23, 217
AluBI	AGCT	5 cut(s)	58, 94, 229, 283, 306
AluI	AGCT	5 cut(s)	58, 94, 229, 283, 306
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	2 cut(s)	182, 195
Ama87I	CYCGRG	1 cut(s)	83
AspS9I	GGNCC	3 cut(s)	6, 14, 36
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	3 cut(s)	52, 158, 287
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	3 cut(s)	6, 14, 36
BamHI	GGATCC	1 cut(s)	187
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	126
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	3 cut(s)	6, 14, 36
BmeT110I	CYCGRG	1 cut(s)	83
BmgT120I	GGNCC	3 cut(s)	6, 14, 36
BmiI	GGNNCC	2 cut(s)	8, 189
BmrFI	CCNGG	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	250
BmuI	ACTGGG	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 23, 217
Bse1I	ACTGG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	3 cut(s)	220, 244, 265
BseLI	CCNNNNNNNGG	3 cut(s)	16, 23, 217
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	293
BseYI	CCCAGC	1 cut(s)	229
Bsh1285I	CGRYCG	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	17, 212
BslI	CCNNNNNNNGG	3 cut(s)	16, 23, 217
BsmAI	GTCTC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	103, 187
BspACI	CCGC	3 cut(s)	64, 69, 152
BspLI	GGNNCC	2 cut(s)	8, 189
BspPI	GGATC	2 cut(s)	182, 195
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	2 cut(s)	103, 187
Bst4CI	ACNGT	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstDSI	CCRYGG	1 cut(s)	10
BstEII	GGTNACC	1 cut(s)	206
BstF5I	GGATG	3 cut(s)	220, 244, 265
BstKTI	GATC	2 cut(s)	106, 190
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	2 cut(s)	103, 187
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 77, 260
BstPI	GGTNACC	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	220, 244, 265
Cfr13I	GGNCC	3 cut(s)	6, 14, 36
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	8 cut(s)	58, 80, 94, 130, 151, 229, 283, 306
CviKI_1	RGCY	8 cut(s)	58, 80, 94, 130, 151, 229, 283, 306
CviQI	GTAC	1 cut(s)	193
DpnI	GATC	2 cut(s)	105, 189
DpnII	GATC	2 cut(s)	103, 187
Eco47I	GGWCC	3 cut(s)	6, 14, 36
Eco88I	CYCGRG	1 cut(s)	83
Eco91I	GGTNACC	1 cut(s)	206
EcoO65I	GGTNACC	1 cut(s)	206
FaeI	CATG	1 cut(s)	36
FaiI	YATR	2 cut(s)	34, 162
FatI	CATG	1 cut(s)	32
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	3 cut(s)	227, 251, 272
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	1 cut(s)	152
GsaI	CCCAGC	1 cut(s)	233
GsuI	CTGGAG	1 cut(s)	203
HapII	CCGG	2 cut(s)	17, 212
Hin1II	CATG	1 cut(s)	36
HinfI	GANTC	2 cut(s)	29, 86
HpaII	CCGG	2 cut(s)	17, 212
HphI	GGTGA	3 cut(s)	52, 158, 287
Hpy188I	TCNGA	2 cut(s)	26, 115
Hpy99I	CGWCG	2 cut(s)	26, 77
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	254, 263
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 77, 260
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	103, 187
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	5 cut(s)	30, 167, 215, 225, 254
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	2 cut(s)	105, 189
MboI	GATC	2 cut(s)	103, 187
MboII	GAAGA	1 cut(s)	64
MflI	RGATCY	1 cut(s)	187
MlyI	GAGTC	2 cut(s)	23, 95
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	4 cut(s)	49, 92, 178, 271
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	2 cut(s)	17, 212
MspR9I	CCNGG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	256
MwoI	GCNNNNNNNGC	3 cut(s)	55, 77, 260
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	2 cut(s)	103, 187
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	2 cut(s)	8, 189
PaeR7I	CTCGAG	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	153
PleI	GAGTC	2 cut(s)	23, 94
PpsI	GAGTC	2 cut(s)	23, 94
PspEI	GGTNACC	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	8, 189
PspPI	GGNCC	3 cut(s)	6, 14, 36
PspXI	VCTCGAGB	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	2 cut(s)	103, 187
Sau96I	GGNCC	3 cut(s)	6, 14, 36
SchI	GAGTC	2 cut(s)	23, 95
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	8 cut(s)	41, 60, 96, 121, 180, 231, 285, 308
SfaNI	GCATC	1 cut(s)	250
Sfr274I	CTCGAG	1 cut(s)	83
SinI	GGWCC	3 cut(s)	6, 14, 36
SlaI	CTCGAG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SsiI	CCGC	3 cut(s)	64, 69, 152
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	3 cut(s)	84, 102, 132
TauI	GCSGC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	188, 255
TspGWI	ACGGA	1 cut(s)	180
VpaK11BI	GGWCC	3 cut(s)	6, 14, 36
XhoI	CTCGAG	1 cut(s)	83
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.