RchiOBHm_Chr5g0034791

aminotransferase ACS10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008719
Physical Location & Seq
Reverse (-)
28680788 .. 28683530
2743 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31375

Sequence Viewer

Length: 207 bp
ATGGAGCTGAAACTGGCTGTGGCAGGATTCATGTCTAAAGCCGTTGGAAATTCAGTTACCTACAACCGCTCACAAATTGTATTGACAGCTGGTGCAACCCCTGCAATTGAGATTCTAAGCTTCTGCCTAGCAGACAGTGGAAACACATTTATTGTTCCGGCACCATATTACCCTGGTTTGGATAGAGATGTGAAGTGGCGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

68

Amino Acids

7.34

Weight (kDa)

7.88

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 2 - 67 8e-10 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 160
AccBSI CCGCTC 1 cut(s) 69
AciI CCGC 1 cut(s) 67
AcsI RAATTY 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 178
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 3 cut(s) 7, 89, 120
AluI AGCT 3 cut(s) 7, 89, 120
ApoI RAATTY 1 cut(s) 49
BanI GGYRCC 1 cut(s) 160
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 174
BfaI CTAG 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 178
BseNI ACTGG 1 cut(s) 18
BshNI GGYRCC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 178
BspACI CCGC 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 160
BsrBI CCGCTC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 142
CviAII CATG 1 cut(s) 31
CviJI RGCY 5 cut(s) 7, 17, 41, 89, 120
CviKI_1 RGCY 5 cut(s) 7, 17, 41, 89, 120
DdeI CTNAG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 172
FaeI CATG 1 cut(s) 34
FaiI YATR 2 cut(s) 32, 166
FatI CATG 1 cut(s) 30
FspBI CTAG 1 cut(s) 128
HapII CCGG 1 cut(s) 158
Hin1II CATG 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 2 cut(s) 27, 112
HpaII CCGG 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 95, 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 1 cut(s) 34
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 9, 75, 114, 159, 171, 186
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 55
MbiI CCGCTC 1 cut(s) 69
MfeI CAATTG 1 cut(s) 105
MluCI AATT 3 cut(s) 49, 75, 105
MmeI TCCRAC 1 cut(s) 25
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 174
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 101
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 162
PfeI GAWTC 2 cut(s) 27, 112
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 162
PvuII CAGCTG 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 174
SetI ASST 4 cut(s) 9, 62, 91, 122
SgeI CNNG 9 cut(s) 26, 36, 43, 102, 113, 140, 170, 185, 186
Sse9I AATT 3 cut(s) 49, 75, 105
SsiI CCGC 1 cut(s) 67
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 137
TasI AATT 3 cut(s) 49, 75, 105
TfiI GAWTC 2 cut(s) 27, 112
TscAI CASTG 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 19
TspRI CASTG 1 cut(s) 142
XapI RAATTY 1 cut(s) 49
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.