Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004590

Physical Location & Seq

Genomic Coordinates Reverse (-)

55021544 .. 55021819

Gene Structure 276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39922

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGCTGGCTATTTGCAGAAAGGATGCACTTAGGGAGCTTTCTTCTCCAGGGAAGAGCGGCAGCTTCTTTTACTTGACTCAAGATGATAGATTCATGATAAAGATTGTCAAAAATACGGAAGTCAAGGTTAGTTGCTACCTGTTTGACTTCTATCTTCCTGACTTCTACTTTTCTGGCAACAAAAGAACATTTGTGTTGAACAATTTGTGCTTTGCAGTTTGTTTGTTTCTTAAATTCTATTCTATACTCCTAATTAGGCAACAGGTCGATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008092 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009958 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016020 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0022622 GO:0030258 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044238 GO:0044255 GO:0044464 GO:0044877 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051015 GO:0071704 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

91

Amino Acids

10.71

Weight (kDa)

8.88

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	4 - 65	1e-14	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07960 AT3G07960 AT3G07960 AT3G07960
fragaria_vesca	FvH4_7g03200
malus_domestica	MD02G1285400.v1.1 MD07G1050500.v1.1
prunus_persica	Prupe.2G037500_v2.0.a1 Prupe.2G037500_v2.0.a1
pyrus_communis	pycom02g24280 pycom07g03650
rosa_chinensis	RchiOBHm_Chr1g0325051 RchiOBHm_Chr4g0399911 RchiOBHm_Chr4g0430501 RchiOBHm_Chr5g0045071
rosa_laevigata	RLG00000014230 RLG00000030160 RLG00000035174
rosa_multiflora	Rmu_sc0005212.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324920 Rroxscaffold_5G00338600
rosa_rugosa	Rorug01G0049400 Rorug01G0049500
rosa_samantha	Rh1AG065600 Rh1BG053900 Rh1CG066800 Rh3BG243900 Rh4AG093600 Rh5BG309800 Rh7CG313900
rosa_wichuraiana	Rw0G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	57
AciI	CCGC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	2 cut(s)	37, 63
AluI	AGCT	2 cut(s)	37, 63
ApeKI	GCWGC	1 cut(s)	60
ApoI	RAATTY	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	48
BisI	GCNGC	2 cut(s)	58, 61
BlsI	GCNGC	2 cut(s)	59, 62
Bme1390I	CCNGG	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	72
BspACI	CCGC	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	93
BspQI	GCTCTTC	1 cut(s)	47
BsrBI	CCGCTC	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	28
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	93
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	3 cut(s)	8, 37, 63
CviKI_1	RGCY	3 cut(s)	8, 37, 63
DdeI	CTNAG	1 cut(s)	29
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	46
FaeI	CATG	1 cut(s)	97
FaiI	YATR	2 cut(s)	95, 245
FatI	CATG	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	58, 61
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	58, 61
GluI	GCNGC	2 cut(s)	58, 61
GsuI	CTGGAG	1 cut(s)	30
Hin1II	CATG	1 cut(s)	97
HinfI	GANTC	2 cut(s)	76, 90
Hpy188III	TCNNGA	3 cut(s)	80, 94, 158
HpyCH4V	TGCA	3 cut(s)	15, 26, 215
HpyF3I	CTNAG	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	97
LguI	GCTCTTC	1 cut(s)	47
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	6 cut(s)	33, 60, 152, 159, 171, 248
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	1 cut(s)	13
MbiI	CCGCTC	1 cut(s)	57
MboII	GAAGA	3 cut(s)	33, 64, 146
MluCI	AATT	3 cut(s)	202, 233, 252
MlyI	GAGTC	1 cut(s)	70
MseI	TTAA	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
NlaIII	CATG	1 cut(s)	97
PagI	TCATGA	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	59, 62
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	2 cut(s)	58, 61
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	5 cut(s)	39, 65, 129, 141, 267
SfaNI	GCATC	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	3 cut(s)	202, 233, 252
SsiI	CCGC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	46
TaqI	TCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	202, 233, 252
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseI	GCWGC	1 cut(s)	60
TspDTI	ATGAA	1 cut(s)	82
TspGWI	ACGGA	1 cut(s)	131
XapI	RAATTY	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.