Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004590

Physical Location & Seq

Genomic Coordinates Forward (+)

23109440 .. 23111930

Gene Structure 2491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG243900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGATTGGATTAATGTGCAATGCAGAGGTCCCGTAGAGCTCTTCTGCATCGAAGAGCTTTGGAAAAAGTCACCACTGGAAGGAGCCGCTTGTATAAGGCGTTTGAGGGAGTTATACCAAGTAGATCCTGCAGATTATATGCTGGCCATTTGCAGAAATGATGCTCTTAGGGAGCTTTCTTCTCCAGGGAAGAGGGGCAGCTTCTTTTACTTGACTCAGGATGATAGATTCATGATAAAGACTGTCAAAAAATCGGAAGTCAAGGTTTCCTCCTATTTATTGTGGAATTCCATTTGCATTCCACCGGAATGTGTTTTATCATGTGAAGTGAAGAGATATGGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008092 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009958 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016020 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0022622 GO:0030258 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044238 GO:0044255 GO:0044464 GO:0044877 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051015 GO:0071704 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

115

Amino Acids

13.35

Weight (kDa)

8.16

Isoelectric Point (pI)

62.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	50 - 91	4e-14	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07960 AT3G07960 AT3G07960 AT3G07960
fragaria_vesca	FvH4_7g03200
malus_domestica	MD02G1285400.v1.1 MD07G1050500.v1.1
prunus_persica	Prupe.2G037500_v2.0.a1 Prupe.2G037500_v2.0.a1
pyrus_communis	pycom02g24280 pycom07g03650
rosa_chinensis	RchiOBHm_Chr1g0325051 RchiOBHm_Chr4g0399911 RchiOBHm_Chr4g0430501 RchiOBHm_Chr5g0045071
rosa_laevigata	RLG00000014230 RLG00000030160 RLG00000035174
rosa_multiflora	Rmu_sc0005212.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324920 Rroxscaffold_5G00338600
rosa_rugosa	Rorug01G0049400 Rorug01G0049500
rosa_samantha	Rh1AG065600 Rh1BG053900 Rh1CG066800 Rh3BG243900 Rh4AG093600 Rh5BG309800 Rh7CG313900
rosa_wichuraiana	Rw0G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	4 cut(s)	40, 58, 175, 201
AluI	AGCT	4 cut(s)	40, 58, 175, 201
Alw21I	GWGCWC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	198
ApoI	RAATTY	1 cut(s)	286
AseI	ATTAAT	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	29
BalI	TGGCCA	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	129
BisI	GCNGC	2 cut(s)	87, 199
BlsI	GCNGC	2 cut(s)	88, 200
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	2 cut(s)	31, 85
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	57, 151
BpmI	CTGGAG	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	340
BsaJI	CCNNGG	1 cut(s)	185
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	26
Bse8I	GATNNNNATC	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	210
BshFI	GGCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	124, 341
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	31, 85
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	1 cut(s)	119
BspQI	GCTCTTC	2 cut(s)	47, 48
BsrDI	GCAATG	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	2 cut(s)	124, 341
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	4 cut(s)	47, 48, 185, 326
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	167, 216
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	2 cut(s)	127, 344
BstMBI	GATC	2 cut(s)	124, 341
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	144
CciI	TCATGA	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	29
CviAII	CATG	2 cut(s)	232, 321
CviJI	RGCY	6 cut(s)	40, 58, 86, 146, 175, 201
CviKI_1	RGCY	6 cut(s)	40, 58, 86, 146, 175, 201
DdeI	CTNAG	2 cut(s)	167, 216
DpnI	GATC	2 cut(s)	126, 343
DpnII	GATC	2 cut(s)	124, 341
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	4 cut(s)	47, 48, 185, 326
EarI	CTCTTC	4 cut(s)	47, 48, 185, 326
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	2 cut(s)	235, 324
FaiI	YATR	8 cut(s)	95, 115, 138, 140, 233, 322, 339, 346
FaqI	GGGAC	1 cut(s)	15
FatI	CATG	2 cut(s)	231, 320
Fnu4HI	GCNGC	2 cut(s)	87, 199
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	87, 199
GluI	GCNGC	2 cut(s)	87, 199
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	305
Hin1II	CATG	2 cut(s)	235, 324
HinfI	GANTC	2 cut(s)	214, 228
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	1 cut(s)	63
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	2 cut(s)	218, 232
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	6 cut(s)	19, 24, 48, 131, 153, 297
HpyF3I	CTNAG	2 cut(s)	167, 216
Hsp92II	CATG	2 cut(s)	235, 324
Kzo9I	GATC	2 cut(s)	124, 341
LguI	GCTCTTC	2 cut(s)	47, 48
LmnI	GCTCC	2 cut(s)	83, 172
LpnPI	CCDG	7 cut(s)	62, 128, 141, 171, 198, 203, 318
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	2 cut(s)	57, 151
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	2 cut(s)	126, 343
MboI	GATC	2 cut(s)	124, 341
MboII	GAAGA	5 cut(s)	34, 65, 171, 202, 343
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	1 cut(s)	286
MluNI	TGGCCA	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	208
MnlI	CCTC	4 cut(s)	20, 99, 186, 280
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	307
Msp20I	TGGCCA	1 cut(s)	146
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	186
NdeII	GATC	2 cut(s)	124, 341
NlaIII	CATG	2 cut(s)	235, 324
NlaIV	GGNNCC	2 cut(s)	31, 85
NmuCI	GTSAC	1 cut(s)	69
PagI	TCATGA	1 cut(s)	231
PciSI	GCTCTTC	2 cut(s)	47, 48
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	88, 200
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	29
PshBI	ATTAAT	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	31, 85
PspPI	GGNCC	1 cut(s)	29
PspPPI	RGGWCCY	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	307
SacI	GAGCTC	1 cut(s)	42
SapI	GCTCTTC	2 cut(s)	47, 48
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	2 cut(s)	87, 199
Sau3AI	GATC	2 cut(s)	124, 341
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	6 cut(s)	31, 42, 60, 177, 203, 267
SfaNI	GCATC	2 cut(s)	57, 151
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	307
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	1 cut(s)	87
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	51
TasI	AATT	1 cut(s)	286
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	1 cut(s)	198
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	29
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.