Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004590

Physical Location & Seq

Genomic Coordinates Reverse (-)

40696500 .. 40697098

Gene Structure 599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32319

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGCTAGCCATTTTCAGAAATGATGCTCTTAGGGAGCTTTCTTCTCCAGGGAAGAGTGGCAGCTTCTTTTACTTGACTCAGGATGATAGATTCATGATAAAGACTGTCAAAAAATCGGAAGTCAAGAATGACTTGGTTGAACGATTCATGAATGTATTAATGAATGTCAAGATATCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008092 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0030258 GO:0044237 GO:0044238 GO:0044255 GO:0044464 GO:0044877 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0051015 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

60

Amino Acids

7.02

Weight (kDa)

9.87

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	5 - 42	3.2e-15	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07960 AT3G07960 AT3G07960 AT3G07960
fragaria_vesca	FvH4_7g03200
malus_domestica	MD02G1285400.v1.1 MD07G1050500.v1.1
prunus_persica	Prupe.2G037500_v2.0.a1 Prupe.2G037500_v2.0.a1
pyrus_communis	pycom02g24280 pycom07g03650
rosa_chinensis	RchiOBHm_Chr1g0325051 RchiOBHm_Chr4g0399911 RchiOBHm_Chr4g0430501 RchiOBHm_Chr5g0045071
rosa_laevigata	RLG00000014230 RLG00000030160 RLG00000035174
rosa_multiflora	Rmu_sc0005212.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324920 Rroxscaffold_5G00338600
rosa_rugosa	Rorug01G0049400 Rorug01G0049500
rosa_samantha	Rh1AG065600 Rh1BG053900 Rh1CG066800 Rh3BG243900 Rh4AG093600 Rh5BG309800 Rh7CG313900
rosa_wichuraiana	Rw0G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	2 cut(s)	37, 63
AluI	AGCT	2 cut(s)	37, 63
ApeKI	GCWGC	1 cut(s)	60
AseI	ATTAAT	1 cut(s)	158
AsuNHI	GCTAGC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	48
BfaI	CTAG	1 cut(s)	5
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	13
BmtI	GCTAGC	1 cut(s)	8
BpmI	CTGGAG	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	91
BspHI	TCATGA	2 cut(s)	93, 147
BspOI	GCTAGC	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	29, 78
BstF5I	GGATG	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	2 cut(s)	93, 147
CviAII	CATG	2 cut(s)	94, 148
CviJI	RGCY	3 cut(s)	8, 37, 63
CviKI_1	RGCY	3 cut(s)	8, 37, 63
DdeI	CTNAG	2 cut(s)	29, 78
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco32I	GATATC	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	46
EcoRV	GATATC	1 cut(s)	174
FaeI	CATG	2 cut(s)	97, 151
FaiI	YATR	2 cut(s)	95, 149
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FatI	CATG	2 cut(s)	93, 147
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	1 cut(s)	5
GluI	GCNGC	1 cut(s)	61
GsuI	CTGGAG	1 cut(s)	30
Hin1II	CATG	2 cut(s)	97, 151
HinfI	GANTC	3 cut(s)	76, 90, 144
Hpy188I	TCNGA	2 cut(s)	17, 118
Hpy188III	TCNNGA	5 cut(s)	80, 94, 124, 148, 169
HpyCH4III	ACNGT	1 cut(s)	106
HpyF3I	CTNAG	2 cut(s)	29, 78
Hsp92II	CATG	2 cut(s)	97, 151
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	3 cut(s)	33, 60, 65
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	5
MboII	GAAGA	2 cut(s)	33, 64
MlyI	GAGTC	1 cut(s)	70
MseI	TTAA	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	97, 151
PagI	TCATGA	2 cut(s)	93, 147
PfeI	GAWTC	2 cut(s)	90, 144
PkrI	GCNGC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PshBI	ATTAAT	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	3 cut(s)	39, 65, 182
SfaNI	GCATC	1 cut(s)	13
SgeI	CNNG	9 cut(s)	17, 59, 60, 85, 92, 106, 136, 145, 160
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	90, 144
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseI	GCWGC	1 cut(s)	60
TspDTI	ATGAA	4 cut(s)	82, 136, 164, 176
VspI	ATTAAT	1 cut(s)	158
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.