Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004590

Physical Location & Seq

Genomic Coordinates Forward (+)

62256523 .. 62261122

Gene Structure 4600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035174

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAAAATCTTGATCTACAGAGTGTGAGGCGTTTGAGGGAGTTATACCAAGTAGATCCTACAGATTATATGCTGGCCATTTTCAGAAATGATGCTCTTAGGGAGCTTTCTTCTCCACGGAAGAGCGGCAGCTTCTTTTACTTGACTCAGGATGATAGATTCATGATAAAGGCTGTCAAAAAATCAGAAGTCAAGCCGTCACCTCCGATCACCGCCTTCGCATTCAGCTCCAGTCAATTGCCACCTACTTCAAGAAGATTTACAGAGTCAGCAATAGGCTCTTCCTCGGTCTCTCCGGGCTTGCCACTAATGCTTAGATTCTGTAAGTTAGAATTGCTTGTTCTTCTCTTAGGGTTAGGGTTTGGTCCATGCTTCATTCAACTTGTGATTGTTGGATTGGGAGATGAAGACAAGCCATCATTTGTACTATGGATTCAATCAGAGCCAAACGATGTAAAGGAGGTTGATTTGGATTCGAAATCCCGGTGGATTTTGAATGTTGATGTTGGATCTGCTGACGGTGATGTCTATATTTGGTCTATAGCCAAAGCTGTGGAAGCCTCTTCTGGTCTTTGGCAATTCGTTGGACTCTCTGCTGCCTCTGGTGTTATATATGCTCTGGCCAAGAAAGAGCTCAACGATCCTGAGAATGCTATCATTGGAGCTTTTGTAGAAATATTCAAAGGCTTTAATGGACATGAGAAGGGAGTTCTTTCCAAACAAAAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008092 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009958 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016020 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0022622 GO:0030258 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044238 GO:0044255 GO:0044464 GO:0044877 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051015 GO:0071704 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

244

Amino Acids

26.86

Weight (kDa)

5.6

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	29 - 65	5.4e-11	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07960 AT3G07960 AT3G07960 AT3G07960
fragaria_vesca	FvH4_7g03200
malus_domestica	MD02G1285400.v1.1 MD07G1050500.v1.1
prunus_persica	Prupe.2G037500_v2.0.a1 Prupe.2G037500_v2.0.a1
pyrus_communis	pycom02g24280 pycom07g03650
rosa_chinensis	RchiOBHm_Chr1g0325051 RchiOBHm_Chr4g0399911 RchiOBHm_Chr4g0430501 RchiOBHm_Chr5g0045071
rosa_laevigata	RLG00000014230 RLG00000030160 RLG00000035174
rosa_multiflora	Rmu_sc0005212.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324920 Rroxscaffold_5G00338600
rosa_rugosa	Rorug01G0049400 Rorug01G0049500
rosa_samantha	Rh1AG065600 Rh1BG053900 Rh1CG066800 Rh3BG243900 Rh4AG093600 Rh5BG309800 Rh7CG313900
rosa_wichuraiana	Rw0G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	524
AccBSI	CCGCTC	1 cut(s)	126
AciI	CCGC	2 cut(s)	126, 213
AclWI	GGATC	3 cut(s)	50, 517, 635
AcoI	YGGCCR	2 cut(s)	75, 621
AfaI	GTAC	1 cut(s)	426
AgsI	TTSAA	5 cut(s)	252, 380, 437, 496, 682
AluBI	AGCT	6 cut(s)	106, 132, 228, 551, 634, 665
AluI	AGCT	6 cut(s)	106, 132, 228, 551, 634, 665
Alw21I	GWGCWC	1 cut(s)	636
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	3 cut(s)	50, 517, 635
AoxI	GGCC	2 cut(s)	75, 621
ApeKI	GCWGC	2 cut(s)	129, 596
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	2 cut(s)	297, 484
AsuHPI	GGTGA	3 cut(s)	192, 202, 533
AsuII	TTCGAA	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	365
BalI	TGGCCA	2 cut(s)	77, 623
BanII	GRGCYC	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	636
BbvI	GCAGC	2 cut(s)	141, 583
BccI	CCATC	1 cut(s)	424
BceAI	ACGGC	1 cut(s)	181
BcnI	CCSGG	2 cut(s)	297, 484
BcoDI	GTCTC	1 cut(s)	295
BfmI	CTRYAG	3 cut(s)	17, 60, 540
BisI	GCNGC	3 cut(s)	127, 130, 597
BlsI	GCNGC	3 cut(s)	128, 131, 598
Bme1390I	CCNGG	2 cut(s)	297, 484
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmrFI	CCNGG	2 cut(s)	297, 484
BmsI	GCATC	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	414
BpmI	CTGGAG	1 cut(s)	214
Bpu14I	TTCGAA	1 cut(s)	476
BpuMI	CCSGG	2 cut(s)	297, 484
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	2 cut(s)	116, 285
BsaXI	ACNNNNNCTCC	2 cut(s)	654, 684
Bse1I	ACTGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	116, 285
BseGI	GGATG	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	161, 636
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	2 cut(s)	141, 583
BshFI	GGCC	2 cut(s)	77, 623
BsiHKAI	GWGCWC	1 cut(s)	636
BsiSI	CCGG	2 cut(s)	296, 484
BsmAI	GTCTC	1 cut(s)	295
BsmI	GAATGC	2 cut(s)	221, 655
BsnI	GGCC	2 cut(s)	77, 623
Bso31I	GGTCTC	1 cut(s)	295
Bsp119I	TTCGAA	1 cut(s)	476
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp143I	GATC	5 cut(s)	13, 55, 207, 509, 640
BspACI	CCGC	2 cut(s)	126, 213
BspANI	GGCC	2 cut(s)	77, 623
BspCNI	CTCAG	2 cut(s)	160, 637
BspHI	TCATGA	1 cut(s)	162
BspPI	GGATC	3 cut(s)	50, 517, 635
BspQI	GCTCTTC	2 cut(s)	116, 286
BspT104I	TTCGAA	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	116, 285
BssMI	GATC	5 cut(s)	13, 55, 207, 509, 640
Bst4CI	ACNGT	1 cut(s)	521
Bst6I	CTCTTC	3 cut(s)	116, 286, 568
BstBI	TTCGAA	1 cut(s)	476
BstC8I	GCNNGC	2 cut(s)	75, 302
BstDEI	CTNAG	5 cut(s)	98, 147, 314, 349, 645
BstDSI	CCRYGG	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	5 cut(s)	16, 58, 210, 512, 643
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	5 cut(s)	13, 55, 207, 509, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	310, 557
BstSCI	CCNGG	2 cut(s)	295, 482
BstSFI	CTRYAG	3 cut(s)	17, 60, 540
BstV1I	GCAGC	2 cut(s)	141, 583
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	2 cut(s)	55, 509
BstXI	CCANNNNNNTGG	1 cut(s)	553
BstYI	RGATCY	2 cut(s)	55, 509
BsuRI	GGCC	2 cut(s)	77, 623
BtgI	CCRYGG	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	75, 302
CciI	TCATGA	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	425
CviAII	CATG	4 cut(s)	163, 369, 698, 729
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	5 cut(s)	98, 147, 314, 349, 645
DpnI	GATC	5 cut(s)	15, 57, 209, 511, 642
DpnII	GATC	5 cut(s)	13, 55, 207, 509, 640
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
EaeI	YGGCCR	2 cut(s)	75, 621
Eam1104I	CTCTTC	3 cut(s)	116, 286, 568
EarI	CTCTTC	3 cut(s)	116, 286, 568
Ecl136II	GAGCTC	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	636
Eco31I	GGTCTC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	634
EcoICRI	GAGCTC	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	636
FaeI	CATG	4 cut(s)	166, 372, 701, 732
FatI	CATG	4 cut(s)	162, 368, 697, 728
Fnu4HI	GCNGC	3 cut(s)	127, 130, 597
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	3 cut(s)	127, 130, 597
GluI	GCNGC	3 cut(s)	127, 130, 597
GsuI	CTGGAG	1 cut(s)	214
HaeIII	GGCC	2 cut(s)	77, 623
HapII	CCGG	2 cut(s)	296, 484
Hin1II	CATG	4 cut(s)	166, 372, 701, 732
HinfI	GANTC	7 cut(s)	145, 159, 266, 318, 433, 473, 588
HpaII	CCGG	2 cut(s)	296, 484
HphI	GGTGA	3 cut(s)	192, 202, 533
Hpy188I	TCNGA	4 cut(s)	86, 187, 207, 442
Hpy188III	TCNNGA	5 cut(s)	11, 149, 163, 252, 644
HpyAV	CCTTC	2 cut(s)	226, 697
HpyCH4III	ACNGT	1 cut(s)	521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	310, 557
HpyF3I	CTNAG	5 cut(s)	98, 147, 314, 349, 645
Hsp92II	CATG	4 cut(s)	166, 372, 701, 732
Kzo9I	GATC	5 cut(s)	13, 55, 207, 509, 640
LguI	GCTCTTC	2 cut(s)	116, 286
LmnI	GCTCC	3 cut(s)	103, 233, 662
LpnPI	CCDG	9 cut(s)	59, 134, 244, 309, 497, 552, 588, 605, 657
Lsp1109I	GCAGC	2 cut(s)	141, 583
LweI	GCATC	1 cut(s)	82
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	5 cut(s)	15, 57, 209, 511, 642
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	5 cut(s)	13, 55, 207, 509, 640
MboII	GAAGA	7 cut(s)	102, 133, 267, 273, 335, 419, 555
MfeI	CAATTG	1 cut(s)	236
MflI	RGATCY	2 cut(s)	55, 509
MhlI	GDGCHC	1 cut(s)	636
MlsI	TGGCCA	2 cut(s)	77, 623
MluCI	AATT	3 cut(s)	236, 332, 578
MluNI	TGGCCA	2 cut(s)	77, 623
MlyI	GAGTC	3 cut(s)	139, 275, 582
MmeI	TCCRAC	3 cut(s)	373, 487, 565
MnlI	CCTC	7 cut(s)	21, 30, 213, 295, 454, 571, 610
Mox20I	TGGCCA	2 cut(s)	77, 623
MscI	TGGCCA	2 cut(s)	77, 623
MseI	TTAA	1 cut(s)	690
Msp20I	TGGCCA	2 cut(s)	77, 623
MspI	CCGG	2 cut(s)	296, 484
MspR9I	CCNGG	2 cut(s)	297, 484
MunI	CAATTG	1 cut(s)	236
Mva1269I	GAATGC	2 cut(s)	221, 655
MwoI	GCNNNNNNNGC	2 cut(s)	310, 557
NciI	CCSGG	2 cut(s)	297, 484
NdeII	GATC	5 cut(s)	13, 55, 207, 509, 640
NlaIII	CATG	4 cut(s)	166, 372, 701, 732
NmuCI	GTSAC	1 cut(s)	198
NspV	TTCGAA	1 cut(s)	476
PagI	TCATGA	1 cut(s)	162
PciSI	GCTCTTC	2 cut(s)	116, 286
PctI	GAATGC	2 cut(s)	221, 655
PfeI	GAWTC	4 cut(s)	159, 318, 433, 473
PkrI	GCNGC	3 cut(s)	128, 131, 598
PleI	GAGTC	3 cut(s)	139, 274, 582
PpsI	GAGTC	3 cut(s)	139, 274, 582
Psp124BI	GAGCTC	1 cut(s)	636
PspPI	GGNCC	1 cut(s)	365
PsuI	RGATCY	2 cut(s)	55, 509
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SacI	GAGCTC	1 cut(s)	636
SapI	GCTCTTC	2 cut(s)	116, 286
SaqAI	TTAA	1 cut(s)	690
SatI	GCNGC	3 cut(s)	127, 130, 597
Sau3AI	GATC	5 cut(s)	13, 55, 207, 509, 640
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	3 cut(s)	139, 275, 582
ScrFI	CCNGG	2 cut(s)	297, 484
SduI	GDGCHC	1 cut(s)	636
SetI	ASST	9 cut(s)	108, 134, 205, 230, 247, 465, 553, 636, 667
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	3 cut(s)	17, 60, 540
SfuI	TTCGAA	1 cut(s)	476
SinI	GGWCC	1 cut(s)	365
Sse9I	AATT	3 cut(s)	236, 332, 578
SsiI	CCGC	2 cut(s)	126, 213
SspI	AATATT	1 cut(s)	678
SstI	GAGCTC	1 cut(s)	636
StyD4I	CCNGG	2 cut(s)	295, 482
TaaI	ACNGT	1 cut(s)	521
TaqI	TCGA	1 cut(s)	476
TaqII	GACCGA	1 cut(s)	277
TasI	AATT	3 cut(s)	236, 332, 578
TatI	WGTACW	1 cut(s)	424
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	4 cut(s)	159, 318, 433, 473
Tru1I	TTAA	1 cut(s)	690
Tru9I	TTAA	1 cut(s)	690
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	2 cut(s)	129, 596
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	3 cut(s)	151, 364, 420
TspGWI	ACGGA	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.