The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07960 AT3G07960 AT3G07960 AT3G07960 |
| fragaria_vesca | FvH4_7g03200 |
| malus_domestica | MD02G1285400.v1.1 MD07G1050500.v1.1 |
| prunus_persica | Prupe.2G037500_v2.0.a1 Prupe.2G037500_v2.0.a1 |
| pyrus_communis | pycom02g24280 pycom07g03650 |
| rosa_chinensis | RchiOBHm_Chr1g0325051 RchiOBHm_Chr4g0399911 RchiOBHm_Chr4g0430501 RchiOBHm_Chr5g0045071 |
| rosa_laevigata | RLG00000014230 RLG00000030160 RLG00000035174 |
| rosa_multiflora | Rmu_sc0005212.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00324920 Rroxscaffold_5G00338600 |
| rosa_rugosa | Rorug01G0049400 Rorug01G0049500 |
| rosa_samantha | Rh1AG065600 Rh1BG053900 Rh1CG066800 Rh3BG243900 Rh4AG093600 Rh5BG309800 Rh7CG313900 |
| rosa_wichuraiana | Rw0G014780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 42 |
| AgsI | TTSAA | 3 cut(s) | 81, 265, 296 |
| AluBI | AGCT | 3 cut(s) | 57, 268, 287 |
| AluI | AGCT | 3 cut(s) | 57, 268, 287 |
| AoxI | GGCC | 1 cut(s) | 117 |
| ApeKI | GCWGC | 1 cut(s) | 287 |
| AsuC2I | CCSGG | 1 cut(s) | 126 |
| AsuHPI | GGTGA | 2 cut(s) | 123, 268 |
| BanII | GRGCYC | 1 cut(s) | 131 |
| BbsI | GAAGAC | 1 cut(s) | 102 |
| BbvI | GCAGC | 1 cut(s) | 274 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 190, 224 |
| BcnI | CCSGG | 1 cut(s) | 126 |
| BfaI | CTAG | 1 cut(s) | 198 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 47 |
| BisI | GCNGC | 2 cut(s) | 42, 288 |
| BlsI | GCNGC | 2 cut(s) | 43, 289 |
| Bme1390I | CCNGG | 1 cut(s) | 126 |
| BmrFI | CCNGG | 1 cut(s) | 126 |
| BmsI | GCATC | 2 cut(s) | 129, 236 |
| BpiI | GAAGAC | 1 cut(s) | 102 |
| BpmI | CTGGAG | 1 cut(s) | 43 |
| BpuMI | CCSGG | 1 cut(s) | 126 |
| BsaJI | CCNNGG | 2 cut(s) | 45, 114 |
| BseDI | CCNNGG | 2 cut(s) | 45, 114 |
| BseXI | GCAGC | 1 cut(s) | 274 |
| BsgI | GTGCAG | 1 cut(s) | 273 |
| Bsh1285I | CGRYCG | 1 cut(s) | 39 |
| BshFI | GGCC | 1 cut(s) | 119 |
| BsiEI | CGRYCG | 1 cut(s) | 39 |
| BsiSI | CCGG | 1 cut(s) | 125 |
| BslFI | GGGAC | 1 cut(s) | 220 |
| BsmFI | GGGAC | 1 cut(s) | 220 |
| BsnI | GGCC | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 131 |
| Bsp143I | GATC | 2 cut(s) | 36, 169 |
| BspACI | CCGC | 1 cut(s) | 42 |
| BspANI | GGCC | 1 cut(s) | 119 |
| BssECI | CCNNGG | 2 cut(s) | 45, 114 |
| BssMI | GATC | 2 cut(s) | 36, 169 |
| BssT1I | CCWWGG | 1 cut(s) | 45 |
| BstC8I | GCNNGC | 1 cut(s) | 285 |
| BstDEI | CTNAG | 1 cut(s) | 178 |
| BstKTI | GATC | 2 cut(s) | 39, 172 |
| BstMBI | GATC | 2 cut(s) | 36, 169 |
| BstMCI | CGRYCG | 1 cut(s) | 39 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 47, 224, 296 |
| BstSCI | CCNGG | 1 cut(s) | 124 |
| BstV1I | GCAGC | 1 cut(s) | 274 |
| BstV2I | GAAGAC | 1 cut(s) | 102 |
| BsuRI | GGCC | 1 cut(s) | 119 |
| BtsI | GCAGTG | 1 cut(s) | 222 |
| BtsIMutI | CAGTG | 1 cut(s) | 222 |
| Cac8I | GCNNGC | 1 cut(s) | 285 |
| CviAII | CATG | 1 cut(s) | 274 |
| CviJI | RGCY | 5 cut(s) | 57, 119, 129, 268, 287 |
| CviKI_1 | RGCY | 5 cut(s) | 57, 119, 129, 268, 287 |
| DdeI | CTNAG | 1 cut(s) | 178 |
| DpnI | GATC | 2 cut(s) | 38, 171 |
| DpnII | GATC | 2 cut(s) | 36, 169 |
| Eco130I | CCWWGG | 1 cut(s) | 45 |
| Eco24I | GRGCYC | 1 cut(s) | 131 |
| EcoT14I | CCWWGG | 1 cut(s) | 45 |
| EcoT38I | GRGCYC | 1 cut(s) | 131 |
| ErhI | CCWWGG | 1 cut(s) | 45 |
| FaeI | CATG | 1 cut(s) | 277 |
| FaiI | YATR | 4 cut(s) | 241, 243, 275, 312 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 276, 308 |
| FaqI | GGGAC | 1 cut(s) | 220 |
| FatI | CATG | 1 cut(s) | 273 |
| Fnu4HI | GCNGC | 2 cut(s) | 42, 288 |
| FriOI | GRGCYC | 1 cut(s) | 131 |
| Fsp4HI | GCNGC | 2 cut(s) | 42, 288 |
| FspBI | CTAG | 1 cut(s) | 198 |
| GluI | GCNGC | 2 cut(s) | 42, 288 |
| GsuI | CTGGAG | 1 cut(s) | 43 |
| HaeIII | GGCC | 1 cut(s) | 119 |
| HapII | CCGG | 1 cut(s) | 125 |
| Hin1II | CATG | 1 cut(s) | 277 |
| HindIII | AAGCTT | 1 cut(s) | 266 |
| HinfI | GANTC | 3 cut(s) | 95, 207, 233 |
| HpaII | CCGG | 1 cut(s) | 125 |
| HphI | GGTGA | 2 cut(s) | 123, 268 |
| Hpy188I | TCNGA | 3 cut(s) | 18, 36, 232 |
| Hpy188III | TCNNGA | 2 cut(s) | 60, 81 |
| HpyCH4V | TGCA | 2 cut(s) | 227, 290 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 47, 224, 296 |
| HpyF3I | CTNAG | 1 cut(s) | 178 |
| Hsp92II | CATG | 1 cut(s) | 277 |
| Kzo9I | GATC | 2 cut(s) | 36, 169 |
| LmnI | GCTCC | 1 cut(s) | 62 |
| LpnPI | CCDG | 2 cut(s) | 73, 138 |
| Lsp1109I | GCAGC | 1 cut(s) | 274 |
| LweI | GCATC | 2 cut(s) | 129, 236 |
| MaeI | CTAG | 1 cut(s) | 198 |
| MalI | GATC | 2 cut(s) | 38, 171 |
| MboI | GATC | 2 cut(s) | 36, 169 |
| MboII | GAAGA | 3 cut(s) | 96, 102, 164 |
| MhlI | GDGCHC | 1 cut(s) | 131 |
| MluCI | AATT | 3 cut(s) | 155, 161, 328 |
| MlyI | GAGTC | 2 cut(s) | 104, 242 |
| MnlI | CCTC | 5 cut(s) | 42, 124, 130, 247, 310 |
| MspI | CCGG | 1 cut(s) | 125 |
| MspR9I | CCNGG | 1 cut(s) | 126 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 47, 224, 296 |
| NciI | CCSGG | 1 cut(s) | 126 |
| NdeII | GATC | 2 cut(s) | 36, 169 |
| NlaIII | CATG | 1 cut(s) | 277 |
| NmeAIII | GCCGAG | 1 cut(s) | 95 |
| PfeI | GAWTC | 1 cut(s) | 207 |
| PkrI | GCNGC | 2 cut(s) | 43, 289 |
| Ple19I | CGATCG | 1 cut(s) | 39 |
| PleI | GAGTC | 2 cut(s) | 103, 241 |
| PpsI | GAGTC | 2 cut(s) | 103, 241 |
| PvuI | CGATCG | 1 cut(s) | 39 |
| SatI | GCNGC | 2 cut(s) | 42, 288 |
| Sau3AI | GATC | 2 cut(s) | 36, 169 |
| SchI | GAGTC | 2 cut(s) | 104, 242 |
| ScrFI | CCNGG | 1 cut(s) | 126 |
| SduI | GDGCHC | 1 cut(s) | 131 |
| SetI | ASST | 6 cut(s) | 59, 258, 270, 289, 321, 325 |
| SfaNI | GCATC | 2 cut(s) | 129, 236 |
| Sse9I | AATT | 3 cut(s) | 155, 161, 328 |
| SsiI | CCGC | 1 cut(s) | 42 |
| SspMI | CTAG | 1 cut(s) | 198 |
| StyD4I | CCNGG | 1 cut(s) | 124 |
| StyI | CCWWGG | 1 cut(s) | 45 |
| TasI | AATT | 3 cut(s) | 155, 161, 328 |
| TauI | GCSGC | 1 cut(s) | 44 |
| TfiI | GAWTC | 1 cut(s) | 207 |
| TscAI | CASTG | 1 cut(s) | 229 |
| TseI | GCWGC | 1 cut(s) | 287 |
| TspRI | CASTG | 1 cut(s) | 229 |
| XspI | CTAG | 1 cut(s) | 198 |