Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004590

Physical Location & Seq

Genomic Coordinates Forward (+)

19832923 .. 19837067

Gene Structure 4145 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG093600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCTGGCCATTTTCAGAAATGATGCTCTTAGGGAGCTTTCGTCTCCAGGGAAGAGTGGCAGCTTCTTTTACTTGACTCAGGATGATAGATTCATGATAAAGACTGTCAAAAAATCAGAAGTCAAGGTTAGTTGCTACCTGTTCACTTCTATCTTTCTGACTTTTACTTTTCTGGCAACAAAAGTACATGAAATTTGGCTAGTACATGTTTTGCTTGTTTTACTGAAATTTGGCTATTTTCTTCTTGCCGATCAAGAGAATGACTTGGTTGAACGATTCATGAATGTATTTATGAATGTCAAGATATCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008092 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009958 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016020 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0022622 GO:0030258 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044238 GO:0044255 GO:0044464 GO:0044877 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051015 GO:0071704 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

104

Amino Acids

12.21

Weight (kDa)

9.17

Isoelectric Point (pI)

29.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	6 - 43	6.1e-15	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07960 AT3G07960 AT3G07960 AT3G07960
fragaria_vesca	FvH4_7g03200
malus_domestica	MD02G1285400.v1.1 MD07G1050500.v1.1
prunus_persica	Prupe.2G037500_v2.0.a1 Prupe.2G037500_v2.0.a1
pyrus_communis	pycom02g24280 pycom07g03650
rosa_chinensis	RchiOBHm_Chr1g0325051 RchiOBHm_Chr4g0399911 RchiOBHm_Chr4g0430501 RchiOBHm_Chr5g0045071
rosa_laevigata	RLG00000014230 RLG00000030160 RLG00000035174
rosa_multiflora	Rmu_sc0005212.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324920 Rroxscaffold_5G00338600
rosa_rugosa	Rorug01G0049400 Rorug01G0049500
rosa_samantha	Rh1AG065600 Rh1BG053900 Rh1CG066800 Rh3BG243900 Rh4AG093600 Rh5BG309800 Rh7CG313900
rosa_wichuraiana	Rw0G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	2 cut(s)	192, 227
AfaI	GTAC	2 cut(s)	186, 204
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	2 cut(s)	37, 63
AluI	AGCT	2 cut(s)	37, 63
Alw26I	GTCTC	1 cut(s)	48
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	60
ApoI	RAATTY	2 cut(s)	192, 227
BalI	TGGCCA	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	200
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	72
BshFI	GGCC	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	48
BsmBI	CGTCTC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	250
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	91
BspHI	TCATGA	2 cut(s)	93, 279
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	29, 78
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	250
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	2 cut(s)	93, 279
Csp6I	GTAC	2 cut(s)	185, 203
CviAII	CATG	4 cut(s)	94, 188, 206, 280
CviJI	RGCY	5 cut(s)	8, 37, 63, 199, 234
CviKI_1	RGCY	5 cut(s)	8, 37, 63, 199, 234
CviQI	GTAC	2 cut(s)	185, 203
DdeI	CTNAG	2 cut(s)	29, 78
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco32I	GATATC	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	46
EcoRV	GATATC	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	4 cut(s)	97, 191, 209, 283
FaiI	YATR	5 cut(s)	95, 189, 207, 281, 293
FatI	CATG	4 cut(s)	93, 187, 205, 279
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	1 cut(s)	61
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	4 cut(s)	97, 191, 209, 283
HinfI	GANTC	3 cut(s)	76, 90, 276
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	3 cut(s)	17, 118, 159
Hpy188III	TCNNGA	5 cut(s)	80, 94, 254, 280, 301
Hpy8I	GTNNAC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	106
HpyF3I	CTNAG	2 cut(s)	29, 78
Hsp92II	CATG	4 cut(s)	97, 191, 209, 283
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	5 cut(s)	33, 60, 65, 152, 158
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	200
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	64, 233
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	2 cut(s)	192, 227
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	70
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
Msp20I	TGGCCA	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	4 cut(s)	97, 191, 209, 283
NspI	RCATGY	1 cut(s)	209
PagI	TCATGA	2 cut(s)	93, 279
PciI	ACATGT	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	90, 276
PkrI	GCNGC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PscI	ACATGT	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
RsaI	GTAC	2 cut(s)	186, 204
RsaNI	GTAC	2 cut(s)	185, 203
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	5 cut(s)	39, 65, 129, 141, 314
SfaNI	GCATC	1 cut(s)	13
Sse9I	AATT	2 cut(s)	192, 227
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	106
TasI	AATT	2 cut(s)	192, 227
TatI	WGTACW	2 cut(s)	184, 202
TfiI	GAWTC	2 cut(s)	90, 276
TseI	GCWGC	1 cut(s)	60
TspDTI	ATGAA	5 cut(s)	82, 204, 268, 296, 308
XapI	RAATTY	2 cut(s)	192, 227
XceI	RCATGY	1 cut(s)	209
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.