Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004590

Physical Location & Seq

Genomic Coordinates Forward (+)

6813770 .. 6816763

Gene Structure 2994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGGTGGGAAGAGATGAAGCAGCTTCTTCTTGTCTTATAAACAATCTTGATGATGGCTGCCTCGTGCACATCTTTAGCATTGATTCTCATGAGTCCTTCGCTGTGGTCATGGACTTCCTGGTATCTTTGCCTGCCTTGAGGAAATTGAAATTTTCCTTGGAATTCCTGTCTGCAGGTGTTCTGGTGTCTAGCATGGTTGCTGAGTCTCTTGTTGAGTTAATAAGTTCTTTGAGGGGAATTACACCAAACCTTCTCAAAAATGTTCCTGCTGCTTCAATAACATTTATTGCATTACCAGATCTAGAGTGTTTGAGGGAGTTATACCAAGTAGATCCTACAGATTATATGGTGGCCATTTGTAGAAATGATGCTTTTAGGGAGCTTTCTTCTCCAGGGAAGAGCGGGAGCTTCTTTTACTTGACTCAGGATGATAGATTCATGATAAAGACTATCAAAAAATTGGAAGTCAAGGTGCTGATAAAGATGCTTCCAAGTTATTATAGACATATGCCTCGGTATGAAAATTCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008092 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009958 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016020 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0022622 GO:0030258 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044238 GO:0044255 GO:0044464 GO:0044877 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051015 GO:0071704 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

178

Amino Acids

19.99

Weight (kDa)

5.39

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	120 - 177	8.7e-22	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07960 AT3G07960 AT3G07960 AT3G07960
fragaria_vesca	FvH4_7g03200
malus_domestica	MD02G1285400.v1.1 MD07G1050500.v1.1
prunus_persica	Prupe.2G037500_v2.0.a1 Prupe.2G037500_v2.0.a1
pyrus_communis	pycom02g24280 pycom07g03650
rosa_chinensis	RchiOBHm_Chr1g0325051 RchiOBHm_Chr4g0399911 RchiOBHm_Chr4g0430501 RchiOBHm_Chr5g0045071
rosa_laevigata	RLG00000014230 RLG00000030160 RLG00000035174
rosa_multiflora	Rmu_sc0005212.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324920 Rroxscaffold_5G00338600
rosa_rugosa	Rorug01G0049400 Rorug01G0049500
rosa_samantha	Rh1AG065600 Rh1BG053900 Rh1CG066800 Rh3BG243900 Rh4AG093600 Rh5BG309800 Rh7CG313900
rosa_wichuraiana	Rw0G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	41
AarI	CACCTGC	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	405
AciI	CCGC	1 cut(s)	405
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	3 cut(s)	152, 164, 526
AgsI	TTSAA	2 cut(s)	151, 279
AjnI	CCWGG	2 cut(s)	120, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	3 cut(s)	26, 385, 411
AluI	AGCT	3 cut(s)	26, 385, 411
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	213
Alw44I	GTGCAC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	329
AoxI	GGCC	1 cut(s)	354
ApaLI	GTGCAC	1 cut(s)	68
ApeKI	GCWGC	3 cut(s)	23, 60, 272
ApoI	RAATTY	3 cut(s)	152, 164, 526
BaeGI	GKGCMC	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	356
BauI	CACGAG	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	3 cut(s)	35, 47, 259
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	122, 396
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	2 cut(s)	192, 305
BfmI	CTRYAG	2 cut(s)	174, 339
BfuAI	ACCTGC	1 cut(s)	167
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	3 cut(s)	24, 61, 273
BlsI	GCNGC	3 cut(s)	25, 62, 274
Bme1390I	CCNGG	2 cut(s)	122, 396
BmrFI	CCNGG	2 cut(s)	122, 396
BmsI	GCATC	2 cut(s)	361, 477
BpmI	CTGGAG	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	160
BsaJI	CCNNGG	3 cut(s)	159, 395, 515
BseBI	CCWGG	2 cut(s)	122, 396
BseDI	CCNNGG	3 cut(s)	159, 395, 515
BseGI	GGATG	1 cut(s)	436
BseMII	CTCAG	2 cut(s)	195, 440
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	35, 47, 259
BshFI	GGCC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	301, 334
BspACI	CCGC	1 cut(s)	405
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	2 cut(s)	196, 439
BspHI	TCATGA	2 cut(s)	91, 441
BspMAI	CTGCAG	1 cut(s)	178
BspMI	ACCTGC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	329
BspQI	GCTCTTC	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	405
BssECI	CCNNGG	3 cut(s)	159, 395, 515
BssMI	GATC	2 cut(s)	301, 334
BssSI	CACGAG	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	65
Bst2UI	CCWGG	2 cut(s)	122, 396
Bst6I	CTCTTC	2 cut(s)	7, 395
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	204, 426
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	2 cut(s)	304, 337
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	2 cut(s)	301, 334
BstNI	CCWGG	2 cut(s)	122, 396
BstSCI	CCNGG	2 cut(s)	120, 394
BstSFI	CTRYAG	2 cut(s)	174, 339
BstSLI	GKGCMC	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	35, 47, 259
BstX2I	RGATCY	2 cut(s)	301, 334
BstYI	RGATCY	2 cut(s)	301, 334
BsuRI	GGCC	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	436
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	135
CciI	TCATGA	2 cut(s)	91, 441
CviAII	CATG	4 cut(s)	92, 112, 196, 442
CviJI	RGCY	5 cut(s)	26, 60, 356, 385, 411
CviKI_1	RGCY	5 cut(s)	26, 60, 356, 385, 411
DdeI	CTNAG	2 cut(s)	204, 426
DpnI	GATC	2 cut(s)	303, 336
DpnII	GATC	2 cut(s)	301, 334
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	2 cut(s)	7, 395
EarI	CTCTTC	2 cut(s)	7, 395
Eco130I	CCWWGG	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	164
EcoRII	CCWGG	2 cut(s)	120, 394
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	4 cut(s)	95, 115, 199, 445
FatI	CATG	4 cut(s)	91, 111, 195, 441
FauI	CCCGC	1 cut(s)	398
FauNDI	CATATG	1 cut(s)	510
Fnu4HI	GCNGC	3 cut(s)	24, 61, 273
FokI	GGATG	1 cut(s)	443
Fsp4HI	GCNGC	3 cut(s)	24, 61, 273
FspBI	CTAG	2 cut(s)	192, 305
GluI	GCNGC	3 cut(s)	24, 61, 273
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	356
Hin1II	CATG	4 cut(s)	95, 115, 199, 445
HinfI	GANTC	5 cut(s)	86, 95, 206, 424, 438
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188III	TCNNGA	5 cut(s)	50, 92, 305, 428, 442
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	109, 263
HpyCH4V	TGCA	3 cut(s)	70, 176, 293
HpyF3I	CTNAG	2 cut(s)	204, 426
Hsp92II	CATG	4 cut(s)	95, 115, 199, 445
Kzo9I	GATC	2 cut(s)	301, 334
LguI	GCTCTTC	1 cut(s)	395
LmnI	GCTCC	2 cut(s)	382, 408
Lsp1109I	GCAGC	3 cut(s)	35, 47, 259
LweI	GCATC	2 cut(s)	361, 477
MaeI	CTAG	2 cut(s)	192, 305
MalI	GATC	2 cut(s)	303, 336
MbiI	CCGCTC	1 cut(s)	405
MboI	GATC	2 cut(s)	301, 334
MboII	GAAGA	4 cut(s)	21, 24, 381, 412
MflI	RGATCY	2 cut(s)	301, 334
MhlI	GDGCHC	1 cut(s)	72
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	6 cut(s)	146, 152, 164, 240, 461, 526
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	3 cut(s)	104, 215, 418
MnlI	CCTC	5 cut(s)	74, 135, 228, 309, 525
Mox20I	TGGCCA	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	356
MspR9I	CCNGG	2 cut(s)	122, 396
MvaI	CCWGG	2 cut(s)	122, 396
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	2 cut(s)	301, 334
NlaIII	CATG	4 cut(s)	95, 115, 199, 445
PagI	TCATGA	2 cut(s)	91, 441
PaqCI	CACCTGC	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	395
PfeI	GAWTC	2 cut(s)	86, 438
PkrI	GCNGC	3 cut(s)	25, 62, 274
PleI	GAGTC	3 cut(s)	103, 214, 418
PpsI	GAGTC	3 cut(s)	103, 214, 418
PsiI	TTATAA	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	120, 394
PspGI	CCWGG	2 cut(s)	120, 394
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	2 cut(s)	301, 334
SapI	GCTCTTC	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	3 cut(s)	24, 61, 273
Sau3AI	GATC	2 cut(s)	301, 334
SchI	GAGTC	3 cut(s)	104, 215, 418
ScrFI	CCNGG	2 cut(s)	122, 396
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	7 cut(s)	9, 28, 181, 255, 387, 413, 477
SfaNI	GCATC	2 cut(s)	361, 477
SfcI	CTRYAG	2 cut(s)	174, 339
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	6 cut(s)	146, 152, 164, 240, 461, 526
SsiI	CCGC	1 cut(s)	405
SspMI	CTAG	2 cut(s)	192, 305
StyD4I	CCNGG	2 cut(s)	120, 394
StyI	CCWWGG	1 cut(s)	159
TasI	AATT	6 cut(s)	146, 152, 164, 240, 461, 526
TfiI	GAWTC	2 cut(s)	86, 438
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TseI	GCWGC	3 cut(s)	23, 60, 272
TspDTI	ATGAA	3 cut(s)	33, 430, 537
VneI	GTGCAC	1 cut(s)	68
XapI	RAATTY	3 cut(s)	152, 164, 526
XbaI	TCTAGA	1 cut(s)	304
XspI	CTAG	2 cut(s)	192, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.