Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004590

Physical Location & Seq

Genomic Coordinates Reverse (-)

40566552 .. 40581181

Gene Structure 14630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG309800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGGGTGTGGTCAATGCAAGTTATGGGGTTGTCGACAAGTGCATATTGATGTTCAAAAATGCTTGGCTGAAGACGCTGCTGGTTCTTCAAGTTTTTAAAGAGCAGGGTTTGATTTTGGCTACACTTTTGGGTCTCTTGGCTTTTTTCTTAATGGCAGAGACTTCGATTACCACGTATGGCCTTAGAAGTGTTGTCAATATTGGAGCAACTACTTTAGTTACAGAGGCTGCAACAACGATATTTGGTGAAGCTGGTGGTGCAGCAACTGGAGTAATGATTGTTAGGCCGGTGGCAAAGACTTTAGCATCTTTGATATATAACTTTCGAAAGCAGAATGAGCCACTTGTGACATGCTCATTGCATTTGAGGGAGTTATACCAAGTAGATCCTGCAAGTTATATGCTAGCCATTTTCAGAAATGATGCTCTTAGGGAGCTTTCTTCTCCAGGGAAGAGTGGCAGCTTCTTTTACTTGACTCAGGATGATAGATTCATGATAAAGACTGTCAAAAAATCGGAAGTCAAGGCAACTCTTGACACCAAGATCGAACAGCTGCATCGTTTCCTTGAATATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008092 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009958 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016020 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0022622 GO:0030258 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044238 GO:0044255 GO:0044464 GO:0044877 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051015 GO:0071704 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

193

Amino Acids

21.4

Weight (kDa)

8.83

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	140 - 180	1.5e-14	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07960 AT3G07960 AT3G07960 AT3G07960
fragaria_vesca	FvH4_7g03200
malus_domestica	MD02G1285400.v1.1 MD07G1050500.v1.1
prunus_persica	Prupe.2G037500_v2.0.a1 Prupe.2G037500_v2.0.a1
pyrus_communis	pycom02g24280 pycom07g03650
rosa_chinensis	RchiOBHm_Chr1g0325051 RchiOBHm_Chr4g0399911 RchiOBHm_Chr4g0430501 RchiOBHm_Chr5g0045071
rosa_laevigata	RLG00000014230 RLG00000030160 RLG00000035174
rosa_multiflora	Rmu_sc0005212.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324920 Rroxscaffold_5G00338600
rosa_rugosa	Rorug01G0049400 Rorug01G0049500
rosa_samantha	Rh1AG065600 Rh1BG053900 Rh1CG066800 Rh3BG243900 Rh4AG093600 Rh5BG309800 Rh7CG313900
rosa_wichuraiana	Rw0G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	36
AclWI	GGATC	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	58, 92, 572
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	4 cut(s)	254, 439, 465, 556
AluI	AGCT	4 cut(s)	254, 439, 465, 556
Alw26I	GTCTC	2 cut(s)	140, 155
AlwI	GGATC	1 cut(s)	383
AlwNI	CAGNNNCTG	2 cut(s)	230, 269
AoxI	GGCC	2 cut(s)	181, 287
ApeKI	GCWGC	5 cut(s)	79, 230, 263, 462, 556
AsuHPI	GGTGA	1 cut(s)	260
AsuII	TTCGAA	1 cut(s)	328
AsuNHI	GCTAGC	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	80
BbvI	GCAGC	5 cut(s)	66, 217, 275, 474, 543
BcgI	CGANNNNNNTGC	2 cut(s)	147, 181
BciT130I	CCWGG	1 cut(s)	450
BcoDI	GTCTC	2 cut(s)	140, 155
BfaI	CTAG	1 cut(s)	407
BisI	GCNGC	5 cut(s)	80, 231, 264, 463, 557
BlsI	GCNGC	5 cut(s)	81, 232, 265, 464, 558
Bme1390I	CCNGG	1 cut(s)	450
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	3 cut(s)	317, 415, 568
BmtI	GCTAGC	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	80
BpmI	CTGGAG	2 cut(s)	291, 432
Bpu14I	TTCGAA	1 cut(s)	328
BsaAI	YACGTR	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	449
Bse118I	RCCGGY	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	1 cut(s)	490
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	1 cut(s)	274
BseXI	GCAGC	5 cut(s)	66, 217, 275, 474, 543
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	183, 289
BsiSI	CCGG	1 cut(s)	290
BsmAI	GTCTC	2 cut(s)	140, 155
BsnI	GGCC	2 cut(s)	183, 289
Bso31I	GGTCTC	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	388, 546
BspANI	GGCC	2 cut(s)	183, 289
BspCNI	CTCAG	1 cut(s)	493
BspHI	TCATGA	1 cut(s)	495
BspOI	GCTAGC	1 cut(s)	410
BspPI	GGATC	1 cut(s)	383
BspT104I	TTCGAA	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	359
BsrFI	RCCGGY	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	2 cut(s)	388, 546
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	177
BstBI	TTCGAA	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	3 cut(s)	185, 431, 480
BstF5I	GGATG	1 cut(s)	490
BstKTI	GATC	2 cut(s)	391, 549
BstMAI	GTCTC	2 cut(s)	140, 155
BstMBI	GATC	2 cut(s)	388, 546
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 260, 340
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	448
BstV1I	GCAGC	5 cut(s)	66, 217, 275, 474, 543
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	183, 289
BtsCI	GGATG	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	408
CaiI	CAGNNNCTG	2 cut(s)	230, 269
CciI	TCATGA	1 cut(s)	495
Cfr10I	RCCGGY	1 cut(s)	289
CseI	GACGC	1 cut(s)	85
CviAII	CATG	2 cut(s)	354, 496
DdeI	CTNAG	3 cut(s)	185, 431, 480
DpnI	GATC	2 cut(s)	390, 548
DpnII	GATC	2 cut(s)	388, 546
DraI	TTTAAA	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Eco31I	GGTCTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	357, 499
FatI	CATG	2 cut(s)	353, 495
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	5 cut(s)	80, 231, 264, 463, 557
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	5 cut(s)	80, 231, 264, 463, 557
FspBI	CTAG	1 cut(s)	407
GluI	GCNGC	5 cut(s)	80, 231, 264, 463, 557
GsuI	CTGGAG	2 cut(s)	291, 432
HaeIII	GGCC	2 cut(s)	183, 289
HapII	CCGG	1 cut(s)	290
HgaI	GACGC	1 cut(s)	85
Hin1II	CATG	2 cut(s)	357, 499
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	478, 492
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	2 cut(s)	419, 520
Hpy188III	TCNNGA	3 cut(s)	482, 496, 536
Hpy8I	GTNNAC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	7 cut(s)	20, 45, 233, 263, 364, 395, 559
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 260, 340
HpyF3I	CTNAG	3 cut(s)	185, 431, 480
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	357, 499
Kzo9I	GATC	2 cut(s)	388, 546
LmnI	GCTCC	2 cut(s)	206, 436
LpnPI	CCDG	9 cut(s)	68, 92, 240, 255, 303, 405, 435, 462, 467
Lsp1109I	GCAGC	5 cut(s)	66, 217, 275, 474, 543
LweI	GCATC	3 cut(s)	317, 415, 568
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	220, 349
MalI	GATC	2 cut(s)	390, 548
MboI	GATC	2 cut(s)	388, 546
MboII	GAAGA	4 cut(s)	80, 85, 435, 466
MflI	RGATCY	1 cut(s)	388
MlyI	GAGTC	1 cut(s)	472
MnlI	CCTC	2 cut(s)	220, 363
MseI	TTAA	2 cut(s)	99, 152
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	556
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	3 cut(s)	76, 260, 340
NdeII	GATC	2 cut(s)	388, 546
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	2 cut(s)	357, 499
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	357
NspV	TTCGAA	1 cut(s)	328
PagI	TCATGA	1 cut(s)	495
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	492
PkrI	GCNGC	5 cut(s)	81, 232, 265, 464, 558
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
Ppu21I	YACGTR	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PstNI	CAGNNNCTG	2 cut(s)	230, 269
PsuI	RGATCY	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	556
RseI	CAYNNNNRTG	1 cut(s)	50
SalI	GTCGAC	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	99, 152
SatI	GCNGC	5 cut(s)	80, 231, 264, 463, 557
Sau3AI	GATC	2 cut(s)	388, 546
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	1 cut(s)	450
SetI	ASST	5 cut(s)	179, 256, 441, 467, 558
SfaNI	GCATC	3 cut(s)	317, 415, 568
SfuI	TTCGAA	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	50
SspI	AATATT	2 cut(s)	202, 575
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	4 cut(s)	36, 167, 328, 549
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	2 cut(s)	99, 152
Tru9I	TTAA	2 cut(s)	99, 152
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	5 cut(s)	79, 230, 263, 462, 556
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	484
XceI	RCATGY	1 cut(s)	357
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.