Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004590

Physical Location & Seq

Genomic Coordinates Reverse (-)

33379672 .. 33399475

Gene Structure 19804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG313900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAGTGAGCTTCTCAGAGATCGATTTAAACTCTCTACCATCTCTATCGCTGAAGCCGAAGATCCCAAACTCTCCTCGCCTGGAATCAATCTTGCAATTCATTTCATCAAACTTCTTCATTCAGATCTGGCCCCCAACATGTCATCAGTCTTCACCTTCAACTCTTCAAGCTCCATCGCATGGCGTTTGAGGGAGTTATACCAAGTAGATCCAGCAGATTATATGCTGGCCATTTGCATAAATGATGCTCTTAGGGAGCTTTCTTTTCCAGGGAAGAGCGGCAGCTTCTTTTACTGGACTCAGGATGATAGATTCATGATAAAGACTGTCAAAAAATCGGAAGTCAAGGGGATTGGAGATTCATTTTTAGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008092 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009958 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016020 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0022622 GO:0030258 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044238 GO:0044255 GO:0044464 GO:0044877 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051015 GO:0071704 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

125

Amino Acids

14.19

Weight (kDa)

5.38

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	79 - 117	8.2e-13	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07960 AT3G07960 AT3G07960 AT3G07960
fragaria_vesca	FvH4_7g03200
malus_domestica	MD02G1285400.v1.1 MD07G1050500.v1.1
prunus_persica	Prupe.2G037500_v2.0.a1 Prupe.2G037500_v2.0.a1
pyrus_communis	pycom02g24280 pycom07g03650
rosa_chinensis	RchiOBHm_Chr1g0325051 RchiOBHm_Chr4g0399911 RchiOBHm_Chr4g0430501 RchiOBHm_Chr5g0045071
rosa_laevigata	RLG00000014230 RLG00000030160 RLG00000035174
rosa_multiflora	Rmu_sc0005212.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324920 Rroxscaffold_5G00338600
rosa_rugosa	Rorug01G0049400 Rorug01G0049500
rosa_samantha	Rh1AG065600 Rh1BG053900 Rh1CG066800 Rh3BG243900 Rh4AG093600 Rh5BG309800 Rh7CG313900
rosa_wichuraiana	Rw0G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccBSI	CCGCTC	1 cut(s)	279
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	2 cut(s)	56, 203
AcoI	YGGCCR	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	180
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	160, 168
AjnI	CCWGG	2 cut(s)	79, 268
AluBI	AGCT	4 cut(s)	10, 171, 259, 285
AluI	AGCT	4 cut(s)	10, 171, 259, 285
AlwI	GGATC	2 cut(s)	56, 203
AoxI	GGCC	2 cut(s)	129, 228
ApeKI	GCWGC	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	145
BalI	TGGCCA	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	2 cut(s)	47, 182
BciT130I	CCWGG	2 cut(s)	81, 270
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	2 cut(s)	280, 283
BlsI	GCNGC	2 cut(s)	281, 284
Bme1390I	CCNGG	2 cut(s)	81, 270
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	81, 270
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	142
Bsa29I	ATCGAT	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	299
BseBI	CCWGG	2 cut(s)	81, 270
BseCI	ATCGAT	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	28, 314
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	294
BshFI	GGCC	2 cut(s)	131, 230
BshVI	ATCGAT	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	180
BsnI	GGCC	2 cut(s)	131, 230
Bsp143I	GATC	4 cut(s)	19, 61, 124, 208
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	2 cut(s)	131, 230
BspCNI	CTCAG	2 cut(s)	27, 313
BspDI	ATCGAT	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	2 cut(s)	56, 203
BspQI	GCTCTTC	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	4 cut(s)	19, 61, 124, 208
Bst2UI	CCWGG	2 cut(s)	81, 270
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	2 cut(s)	169, 269
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	3 cut(s)	14, 251, 300
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	4 cut(s)	22, 64, 127, 211
BstMBI	GATC	4 cut(s)	19, 61, 124, 208
BstNI	CCWGG	2 cut(s)	81, 270
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	2 cut(s)	79, 268
BstV1I	GCAGC	1 cut(s)	294
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	3 cut(s)	61, 124, 208
BstYI	RGATCY	3 cut(s)	61, 124, 208
Bsu15I	ATCGAT	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	131, 230
BsuTUI	ATCGAT	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	228
CciI	TCATGA	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	130
ClaI	ATCGAT	1 cut(s)	22
CviAII	CATG	3 cut(s)	139, 180, 316
CviJI	RGCY	7 cut(s)	10, 56, 131, 171, 230, 259, 285
CviKI_1	RGCY	7 cut(s)	10, 56, 131, 171, 230, 259, 285
DdeI	CTNAG	3 cut(s)	14, 251, 300
DpnI	GATC	4 cut(s)	21, 63, 126, 210
DpnII	GATC	4 cut(s)	19, 61, 124, 208
DraI	TTTAAA	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	169, 269
EarI	CTCTTC	2 cut(s)	169, 269
Eco57I	CTGAAG	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	79, 268
FaeI	CATG	3 cut(s)	142, 183, 319
FaiI	YATR	7 cut(s)	140, 181, 199, 222, 224, 239, 317
FatI	CATG	3 cut(s)	138, 179, 315
Fnu4HI	GCNGC	2 cut(s)	280, 283
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	2 cut(s)	280, 283
GluI	GCNGC	2 cut(s)	280, 283
HaeIII	GGCC	2 cut(s)	131, 230
Hin1II	CATG	3 cut(s)	142, 183, 319
HinfI	GANTC	4 cut(s)	84, 298, 312, 359
HphI	GGTGA	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	17, 124, 340
Hpy188III	TCNNGA	2 cut(s)	302, 316
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	2 cut(s)	95, 237
HpyF3I	CTNAG	3 cut(s)	14, 251, 300
Hsp92II	CATG	3 cut(s)	142, 183, 319
Kzo9I	GATC	4 cut(s)	19, 61, 124, 208
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	2 cut(s)	176, 256
LpnPI	CCDG	9 cut(s)	66, 93, 113, 212, 225, 255, 280, 282, 287
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	1 cut(s)	235
MalI	GATC	4 cut(s)	21, 63, 126, 210
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	4 cut(s)	19, 61, 124, 208
MboII	GAAGA	5 cut(s)	71, 107, 142, 156, 286
MflI	RGATCY	3 cut(s)	61, 124, 208
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	1 cut(s)	96
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	292
MnlI	CCTC	3 cut(s)	85, 183, 364
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	1 cut(s)	27
Msp20I	TGGCCA	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	81, 270
MvaI	CCWGG	2 cut(s)	81, 270
NdeII	GATC	4 cut(s)	19, 61, 124, 208
NlaIII	CATG	3 cut(s)	142, 183, 319
NlaIV	GGNNCC	1 cut(s)	132
NspI	RCATGY	1 cut(s)	142
PagI	TCATGA	1 cut(s)	315
PciI	ACATGT	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	84, 312, 359
PflMI	CCANNNNNTGG	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	281, 284
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PscI	ACATGT	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	79, 268
PspGI	CCWGG	2 cut(s)	79, 268
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	130
PsuI	RGATCY	3 cut(s)	61, 124, 208
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	2 cut(s)	280, 283
Sau3AI	GATC	4 cut(s)	19, 61, 124, 208
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	81, 270
SetI	ASST	5 cut(s)	12, 158, 173, 261, 287
SfaNI	GCATC	1 cut(s)	235
Sse9I	AATT	1 cut(s)	96
SsiI	CCGC	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	79, 268
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	22
TasI	AATT	1 cut(s)	96
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	3 cut(s)	84, 312, 359
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseI	GCWGC	1 cut(s)	282
TspDTI	ATGAA	5 cut(s)	89, 94, 107, 304, 351
Van91I	CCANNNNNTGG	1 cut(s)	180
XceI	RCATGY	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.