RchiOBHm_Chr4g0439221

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017436
Physical Location & Seq
Reverse (-)
61646978 .. 61649627
2650 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40729

Sequence Viewer

Length: 339 bp
ATGGTGGTTGCTGAATTGGGTACAGCGGCGACGTGCTTGCTGGCTGCGCGGGGTCTGCTACAAAGTTCGGCGTTCGAGGGGTGTAGCAGGCCTAGTCTTCAGCGGTCTTTGCTTGAGATGGAGATGTACGGTTGGAAAAGCCGGCCGCCTGAGCTATTCAACTGGTGCGCCGTCGGGGACGACGGTGGTGGCAAAGGAGCAGCGAGCAGTGATGCTTCTCCTATGTTGGCTTGGGTTTGGGTCTCTGGGCCTGGGCTCAACCTTGGGCTGATGGAGCAAGGGACTATTCCTGCTAGGCTAGTTTTGAATTGGGCTTGGGCTCAAGTCAAGGCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

11.87

Weight (kDa)

5.25

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 49
AciI CCGC 4 cut(s) 26, 49, 103, 146
AcoI YGGCCR 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 2 cut(s) 22, 128
AgsI TTSAA 2 cut(s) 160, 307
AjiI CACGTC 1 cut(s) 33
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 247
AoxI GGCC 3 cut(s) 89, 143, 248
ApeKI GCWGC 2 cut(s) 44, 200
AspLEI GCGC 2 cut(s) 49, 170
AspS9I GGNCC 1 cut(s) 248
BanII GRGCYC 2 cut(s) 258, 322
BbsI GAAGAC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 31, 212
BccI CCATC 2 cut(s) 112, 265
BceAI ACGGC 1 cut(s) 155
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 4 cut(s) 93, 294, 299, 337
BisI GCNGC 4 cut(s) 27, 45, 146, 201
BlsI GCNGC 4 cut(s) 28, 46, 147, 202
Bme1390I CCNGG 1 cut(s) 252
BmgBI CACGTC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 150
BpuEI CTTGAG 2 cut(s) 134, 306
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 251, 262
Bse118I RCCGGY 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 251, 262
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 167
BseX3I CGGCCG 1 cut(s) 143
BseXI GCAGC 2 cut(s) 31, 212
Bsh1236I CGCG 1 cut(s) 49
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 3 cut(s) 91, 145, 250
BsiEI CGRYCG 1 cut(s) 146
BsiSI CCGG 1 cut(s) 142
BslFI GGGAC 2 cut(s) 191, 295
BsmAI GTCTC 1 cut(s) 247
BsmFI GGGAC 2 cut(s) 191, 295
BsnI GGCC 3 cut(s) 91, 145, 250
Bso31I GGTCTC 1 cut(s) 247
Bsp1286I GDGCHC 2 cut(s) 258, 322
BspACI CCGC 4 cut(s) 26, 49, 103, 146
BspANI GGCC 3 cut(s) 91, 145, 250
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 141
BsrI ACTGG 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 2 cut(s) 251, 262
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 131, 185
BstC8I GCNNGC 5 cut(s) 38, 42, 89, 143, 205
BstDEI CTNAG 1 cut(s) 150
BstFNI CGCG 1 cut(s) 49
BstHHI GCGC 2 cut(s) 49, 170
BstMAI GTCTC 1 cut(s) 247
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 5 cut(s) 46, 55, 109, 151, 274
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 250
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 31, 212
BstV2I GAAGAC 1 cut(s) 89
BstZI CGGCCG 1 cut(s) 143
BsuRI GGCC 3 cut(s) 91, 145, 250
BtrI CACGTC 1 cut(s) 33
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 5 cut(s) 38, 42, 89, 143, 205
CfoI GCGC 2 cut(s) 49, 170
Cfr10I RCCGGY 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 21, 127
CviQI GTAC 2 cut(s) 21, 127
DdeI CTNAG 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 143
EagI CGGCCG 1 cut(s) 143
EclXI CGGCCG 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 262
Eco147I AGGCCT 1 cut(s) 91
Eco24I GRGCYC 2 cut(s) 258, 322
Eco31I GGTCTC 1 cut(s) 247
Eco52I CGGCCG 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 262
EcoT38I GRGCYC 2 cut(s) 258, 322
ErhI CCWWGG 1 cut(s) 262
FaiI YATR 1 cut(s) 224
FaqI GGGAC 2 cut(s) 191, 295
FauI CCCGC 1 cut(s) 42
Fnu4HI GCNGC 4 cut(s) 27, 45, 146, 201
FriOI GRGCYC 2 cut(s) 258, 322
Fsp4HI GCNGC 4 cut(s) 27, 45, 146, 201
FspBI CTAG 4 cut(s) 93, 294, 299, 337
GlaI GCGC 2 cut(s) 48, 169
GluI GCNGC 4 cut(s) 27, 45, 146, 201
HaeIII GGCC 3 cut(s) 91, 145, 250
HapII CCGG 1 cut(s) 142
HhaI GCGC 2 cut(s) 49, 170
Hin6I GCGC 2 cut(s) 47, 168
HinP1I GCGC 2 cut(s) 47, 168
HpaII CCGG 1 cut(s) 142
Hpy99I CGWCG 3 cut(s) 34, 176, 185
HpyCH4III ACNGT 2 cut(s) 131, 185
HpyCH4IV ACGT 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 55, 109, 151, 274
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 32
HspAI GCGC 2 cut(s) 47, 168
KroI GCCGGC 1 cut(s) 141
KroNI GCCGGC 1 cut(s) 143
LmnI GCTCC 2 cut(s) 197, 274
LpnPI CCDG 9 cut(s) 26, 73, 148, 155, 162, 231, 237, 264, 303
Lsp1109I GCAGC 2 cut(s) 31, 212
LweI GCATC 1 cut(s) 202
MaeI CTAG 4 cut(s) 93, 294, 299, 337
MaeII ACGT 1 cut(s) 32
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 2 cut(s) 258, 322
MluCI AATT 2 cut(s) 14, 307
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 1 cut(s) 70
MroNI GCCGGC 1 cut(s) 141
MspA1I CMGCKG 2 cut(s) 26, 103
MspI CCGG 1 cut(s) 142
MspR9I CCNGG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 5 cut(s) 46, 55, 109, 151, 274
NaeI GCCGGC 1 cut(s) 143
NgoMIV GCCGGC 1 cut(s) 141
PceI AGGCCT 1 cut(s) 91
PdiI GCCGGC 1 cut(s) 143
PkrI GCNGC 4 cut(s) 28, 46, 147, 202
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspPI GGNCC 1 cut(s) 248
RsaI GTAC 2 cut(s) 22, 128
RsaNI GTAC 2 cut(s) 21, 127
SatI GCNGC 4 cut(s) 27, 45, 146, 201
Sau96I GGNCC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 2 cut(s) 258, 322
SetI ASST 4 cut(s) 35, 156, 264, 338
SfaNI GCATC 1 cut(s) 202
SmlI CTYRAG 2 cut(s) 113, 321
SmoI CTYRAG 2 cut(s) 113, 321
Sse9I AATT 2 cut(s) 14, 307
SseBI AGGCCT 1 cut(s) 91
SsiI CCGC 4 cut(s) 26, 49, 103, 146
SspMI CTAG 4 cut(s) 93, 294, 299, 337
StuI AGGCCT 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 2 cut(s) 131, 185
TaiI ACGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 75
TasI AATT 2 cut(s) 14, 307
TauI GCSGC 2 cut(s) 29, 148
TscAI CASTG 1 cut(s) 214
TseI GCWGC 2 cut(s) 44, 200
TspRI CASTG 1 cut(s) 214
XspI CTAG 4 cut(s) 93, 294, 299, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.