Rroxscaffold_7G00169920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017436
Physical Location & Seq
Reverse (-)
10431283 .. 10432139
857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169920.1

Sequence Viewer

Length: 249 bp
ATGGCGATGCACGGTTGGAGAAGCCGGCCGCCAGAGCTATGGTTCGTCGCCGGAGAACAGTCTGACAGTGGCGGCGAAGGAGCAGTGTGCAGGGATGCATCTCTCTTGTTGGCTTGGGTTTGGGCCTGGGTTTCTGGGCCTGGGCTTAGCATTGGGCCGTTGGGGCAGGGGCCTATTCCTGCTAGAGAAGGTCTGATTTGGGCTTGGGCCTACGGGCTTGGCCTCAGATCAAGACAATCTGGGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.77

Weight (kDa)

6.53

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 29, 72
AcoI YGGCCR 1 cut(s) 26
AjnI CCWGG 2 cut(s) 125, 139
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
AoxI GGCC 8 cut(s) 26, 123, 137, 155, 170, 207, 220, 242
ApaI GGGCCC 1 cut(s) 246
AspS9I GGNCC 7 cut(s) 123, 137, 155, 170, 207, 242, 243
BaeGI GKGCMC 1 cut(s) 246
BanII GRGCYC 1 cut(s) 246
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 2 cut(s) 127, 141
BfaI CTAG 1 cut(s) 183
BglI GCCNNNNNGGC 1 cut(s) 163
BisI GCNGC 2 cut(s) 29, 73
BlpI GCTNAGC 1 cut(s) 146
BlsI GCNGC 2 cut(s) 30, 74
Bme1390I CCNGG 2 cut(s) 127, 141
BmgT120I GGNCC 7 cut(s) 123, 137, 155, 170, 207, 242, 243
BmiI GGNNCC 2 cut(s) 171, 244
BmrFI CCNGG 2 cut(s) 127, 141
BmsI GCATC 2 cut(s) 85, 107
Bpu1102I GCTNAGC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 126, 140
Bse118I RCCGGY 1 cut(s) 24
BseBI CCWGG 2 cut(s) 127, 141
BseDI CCNNGG 2 cut(s) 126, 140
BseGI GGATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 238
BseSI GKGCMC 1 cut(s) 246
BseX3I CGGCCG 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 29
BshFI GGCC 8 cut(s) 28, 125, 139, 157, 172, 209, 222, 244
BsiEI CGRYCG 1 cut(s) 29
BsiSI CCGG 2 cut(s) 25, 51
BsnI GGCC 8 cut(s) 28, 125, 139, 157, 172, 209, 222, 244
Bsp120I GGGCCC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 1 cut(s) 227
Bsp1720I GCTNAGC 1 cut(s) 146
BspACI CCGC 2 cut(s) 29, 72
BspANI GGCC 8 cut(s) 28, 125, 139, 157, 172, 209, 222, 244
BspCNI CTCAG 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 171, 244
BsrFI RCCGGY 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 126, 140
BssMI GATC 1 cut(s) 227
Bst2UI CCWGG 2 cut(s) 127, 141
Bst4CI ACNGT 3 cut(s) 14, 60, 68
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 146, 224
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 1 cut(s) 230
BstMBI GATC 1 cut(s) 227
BstMCI CGRYCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 2 cut(s) 34, 163
BstNI CCWGG 2 cut(s) 127, 141
BstSCI CCNGG 2 cut(s) 125, 139
BstSLI GKGCMC 1 cut(s) 246
BstXI CCANNNNNNTGG 1 cut(s) 39
BstZI CGGCCG 1 cut(s) 26
BsuRI GGCC 8 cut(s) 28, 125, 139, 157, 172, 209, 222, 244
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 73, 90
Cac8I GCNNGC 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 24
Cfr13I GGNCC 7 cut(s) 123, 137, 155, 170, 207, 242, 243
DdeI CTNAG 2 cut(s) 146, 224
DpnI GATC 1 cut(s) 229
DpnII GATC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 26
EagI CGGCCG 1 cut(s) 26
EclXI CGGCCG 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 246
Eco52I CGGCCG 1 cut(s) 26
EcoO109I RGGNCCY 2 cut(s) 170, 243
EcoRII CCWGG 2 cut(s) 125, 139
EcoT22I ATGCAT 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 246
FaiI YATR 1 cut(s) 40
Fnu4HI GCNGC 2 cut(s) 29, 73
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 2 cut(s) 29, 73
FspBI CTAG 1 cut(s) 183
GluI GCNGC 2 cut(s) 29, 73
HaeIII GGCC 8 cut(s) 28, 125, 139, 157, 172, 209, 222, 244
HapII CCGG 2 cut(s) 25, 51
HpaII CCGG 2 cut(s) 25, 51
Hpy188I TCNGA 3 cut(s) 64, 195, 227
Hpy188III TCNNGA 1 cut(s) 231
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 71, 182
HpyCH4III ACNGT 3 cut(s) 14, 60, 68
HpyCH4V TGCA 3 cut(s) 10, 90, 98
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 163
HpyF3I CTNAG 2 cut(s) 146, 224
KroI GCCGGC 1 cut(s) 24
KroNI GCCGGC 1 cut(s) 26
Kzo9I GATC 1 cut(s) 227
LmnI GCTCC 1 cut(s) 80
LweI GCATC 2 cut(s) 85, 107
MaeI CTAG 1 cut(s) 183
MalI GATC 1 cut(s) 229
MboI GATC 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 246
MnlI CCTC 1 cut(s) 233
Mph1103I ATGCAT 1 cut(s) 100
MroNI GCCGGC 1 cut(s) 24
MspI CCGG 2 cut(s) 25, 51
MspR9I CCNGG 2 cut(s) 127, 141
MvaI CCWGG 2 cut(s) 127, 141
MwoI GCNNNNNNNGC 2 cut(s) 34, 163
NaeI GCCGGC 1 cut(s) 26
NdeII GATC 1 cut(s) 227
NgoMIV GCCGGC 1 cut(s) 24
NlaIV GGNNCC 2 cut(s) 171, 244
NsiI ATGCAT 1 cut(s) 100
PdiI GCCGGC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 30, 74
Psp6I CCWGG 2 cut(s) 125, 139
PspGI CCWGG 2 cut(s) 125, 139
PspN4I GGNNCC 2 cut(s) 171, 244
PspOMI GGGCCC 1 cut(s) 242
PspPI GGNCC 7 cut(s) 123, 137, 155, 170, 207, 242, 243
SatI GCNGC 2 cut(s) 29, 73
Sau3AI GATC 1 cut(s) 227
Sau96I GGNCC 7 cut(s) 123, 137, 155, 170, 207, 242, 243
ScrFI CCNGG 2 cut(s) 127, 141
SduI GDGCHC 1 cut(s) 246
SetI ASST 2 cut(s) 39, 193
SfaNI GCATC 2 cut(s) 85, 107
SsiI CCGC 2 cut(s) 29, 72
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 125, 139
TaaI ACNGT 3 cut(s) 14, 60, 68
TauI GCSGC 2 cut(s) 31, 75
TscAI CASTG 2 cut(s) 73, 90
TspRI CASTG 2 cut(s) 73, 90
XspI CTAG 1 cut(s) 183
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.