Rh4CG241600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0017436
Physical Location & Seq
Reverse (-)
48834590 .. 48835164
575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG241600.1

Sequence Viewer

Length: 393 bp
ATGAGTCAAGGGGGTCTCCGAGCTTCTCGGAGCGACCTCGGTTTTTCGAAACCTAGGTTTCGACCTAGCAGCAGCGATCTTCCCTCAAGCAAGGCGGCGATCGTGGAGCTGCGAGATACGGCGGCGGTGTGGGACGGGGTCTCAGCGTTGATCGTGAGTTGCGGCGAGAGTGGCTCAAGGCGATCTCCAACCTGCTGTGTTAACCAGACGTCGGTGGACGGACCCATGTTGTGGGCAGGAAGGCCGCCAGAATTGATGGCGGTGGTGAAGGCGGAGTGGCAGAAGAGGATCCAGGCTCCGGCCCGGTTGGACTGGAATGTTTCTCTCTTGTTGGCTTGGGGTTGGGCCTGGGCTCCACTTTGGGCTGATGGGGCAGGAGACTATTCATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.04

Weight (kDa)

8.46

Isoelectric Point (pI)

55.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 200
AccB7I CCANNNNNTGG 1 cut(s) 231
AciI CCGC 7 cut(s) 95, 122, 125, 162, 245, 260, 272
AclWI GGATC 2 cut(s) 283, 296
AcyI GRCGYC 1 cut(s) 209
AfiI CCNNNNNNNGG 3 cut(s) 211, 231, 298
AjnI CCWGG 2 cut(s) 291, 347
AluBI AGCT 2 cut(s) 23, 109
AluI AGCT 2 cut(s) 23, 109
Alw26I GTCTC 3 cut(s) 20, 145, 372
AlwI GGATC 2 cut(s) 283, 296
AoxI GGCC 3 cut(s) 242, 300, 345
ApeKI GCWGC 3 cut(s) 69, 72, 109
AspA2I CCTAGG 1 cut(s) 53
AspS9I GGNCC 3 cut(s) 221, 301, 345
AsuC2I CCSGG 1 cut(s) 304
AsuHPI GGTGA 1 cut(s) 277
AsuII TTCGAA 1 cut(s) 47
AvaII GGWCC 1 cut(s) 221
AvrII CCTAGG 1 cut(s) 53
BamHI GGATCC 1 cut(s) 288
BanII GRGCYC 1 cut(s) 355
BbvI GCAGC 3 cut(s) 81, 84, 96
BccI CCATC 2 cut(s) 250, 362
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 2 cut(s) 293, 349
BcnI CCSGG 1 cut(s) 304
BcoDI GTCTC 3 cut(s) 20, 145, 372
BfaI CTAG 3 cut(s) 54, 66, 391
BfuAI ACCTGC 1 cut(s) 200
BisI GCNGC 7 cut(s) 70, 73, 96, 110, 123, 163, 245
BlnI CCTAGG 1 cut(s) 53
BlsI GCNGC 7 cut(s) 71, 74, 97, 111, 124, 164, 246
Bme1390I CCNGG 3 cut(s) 293, 304, 349
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 221, 301, 345
BmiI GGNNCC 4 cut(s) 223, 290, 297, 354
BmrFI CCNGG 3 cut(s) 293, 304, 349
BplI GAGNNNNNCTC 2 cut(s) 158, 190
Bpu14I TTCGAA 1 cut(s) 47
BpuEI CTTGAG 2 cut(s) 70, 160
BpuMI CCSGG 1 cut(s) 304
BsaHI GRCGYC 1 cut(s) 209
BsaI GGTCTC 2 cut(s) 20, 145
BsaJI CCNNGG 3 cut(s) 37, 53, 348
Bsc4I CCNNNNNNNGG 3 cut(s) 211, 231, 298
Bse1I ACTGG 1 cut(s) 317
BseBI CCWGG 2 cut(s) 293, 349
BseDI CCNNGG 3 cut(s) 37, 53, 348
BseLI CCNNNNNNNGG 3 cut(s) 211, 231, 298
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 317
BseXI GCAGC 3 cut(s) 81, 84, 96
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 3 cut(s) 244, 302, 347
BsiEI CGRYCG 1 cut(s) 102
BsiSI CCGG 2 cut(s) 299, 304
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 3 cut(s) 211, 231, 298
BsmAI GTCTC 3 cut(s) 20, 145, 372
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 3 cut(s) 244, 302, 347
Bso31I GGTCTC 2 cut(s) 20, 145
Bsp119I TTCGAA 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 5 cut(s) 76, 99, 150, 182, 288
BspACI CCGC 7 cut(s) 95, 122, 125, 162, 245, 260, 272
BspANI GGCC 3 cut(s) 244, 302, 347
BspCNI CTCAG 1 cut(s) 155
BspLI GGNNCC 4 cut(s) 223, 290, 297, 354
BspMI ACCTGC 1 cut(s) 200
BspPI GGATC 2 cut(s) 283, 296
BspT104I TTCGAA 1 cut(s) 47
BspTNI GGTCTC 2 cut(s) 20, 145
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 3 cut(s) 37, 53, 348
BssMI GATC 5 cut(s) 76, 99, 150, 182, 288
BssNI GRCGYC 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 2 cut(s) 293, 349
Bst6I CTCTTC 1 cut(s) 278
BstACI GRCGYC 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 142
BstKTI GATC 5 cut(s) 79, 102, 153, 185, 291
BstMAI GTCTC 3 cut(s) 20, 145, 372
BstMBI GATC 5 cut(s) 76, 99, 150, 182, 288
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 171, 371
BstNI CCWGG 2 cut(s) 293, 349
BstSCI CCNGG 3 cut(s) 291, 302, 347
BstV1I GCAGC 3 cut(s) 81, 84, 96
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BsuRI GGCC 3 cut(s) 244, 302, 347
BveI ACCTGC 1 cut(s) 200
Cfr13I GGNCC 3 cut(s) 221, 301, 345
CviAII CATG 2 cut(s) 226, 387
DdeI CTNAG 1 cut(s) 142
DpnI GATC 5 cut(s) 78, 101, 152, 184, 290
DpnII GATC 5 cut(s) 76, 99, 150, 182, 288
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
EciI GGCGGA 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 355
Eco31I GGTCTC 2 cut(s) 20, 145
Eco47I GGWCC 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 291, 347
EcoT14I CCWWGG 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 2 cut(s) 229, 390
FaiI YATR 2 cut(s) 227, 388
FaqI GGGAC 1 cut(s) 146
FatI CATG 2 cut(s) 225, 386
Fnu4HI GCNGC 7 cut(s) 70, 73, 96, 110, 123, 163, 245
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 7 cut(s) 70, 73, 96, 110, 123, 163, 245
FspBI CTAG 3 cut(s) 54, 66, 391
GluI GCNGC 7 cut(s) 70, 73, 96, 110, 123, 163, 245
HaeIII GGCC 3 cut(s) 244, 302, 347
HapII CCGG 2 cut(s) 299, 304
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 2 cut(s) 229, 390
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 1 cut(s) 4
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 2 cut(s) 299, 304
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 2 cut(s) 202, 217
Hpy188I TCNGA 2 cut(s) 20, 30
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 2 cut(s) 202, 217
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 234, 262
HpyCH4IV ACGT 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 371
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 209
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 2 cut(s) 229, 390
KspAI GTTAAC 1 cut(s) 202
Kzo9I GATC 5 cut(s) 76, 99, 150, 182, 288
LmnI GCTCC 4 cut(s) 30, 106, 301, 358
Lsp1109I GCAGC 3 cut(s) 81, 84, 96
MaeI CTAG 3 cut(s) 54, 66, 391
MaeII ACGT 1 cut(s) 209
MalI GATC 5 cut(s) 78, 101, 152, 184, 290
MboI GATC 5 cut(s) 76, 99, 150, 182, 288
MboII GAAGA 2 cut(s) 71, 295
MflI RGATCY 1 cut(s) 288
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 1 cut(s) 251
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 212, 288
MnlI CCTC 3 cut(s) 47, 94, 279
MseI TTAA 1 cut(s) 201
MspI CCGG 2 cut(s) 299, 304
MspR9I CCNGG 3 cut(s) 293, 304, 349
MvaI CCWGG 2 cut(s) 293, 349
MwoI GCNNNNNNNGC 2 cut(s) 171, 371
NciI CCSGG 1 cut(s) 304
NdeII GATC 5 cut(s) 76, 99, 150, 182, 288
NlaIII CATG 2 cut(s) 229, 390
NlaIV GGNNCC 4 cut(s) 223, 290, 297, 354
NspV TTCGAA 1 cut(s) 47
PflFI GACNNNGTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 231
PkrI GCNGC 7 cut(s) 71, 74, 97, 111, 124, 164, 246
Ple19I CGATCG 1 cut(s) 102
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 2 cut(s) 291, 347
PspGI CCWGG 2 cut(s) 291, 347
PspN4I GGNNCC 4 cut(s) 223, 290, 297, 354
PspPI GGNCC 3 cut(s) 221, 301, 345
PsuI RGATCY 1 cut(s) 288
PsyI GACNNNGTC 1 cut(s) 137
PvuI CGATCG 1 cut(s) 102
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 7 cut(s) 70, 73, 96, 110, 123, 163, 245
Sau3AI GATC 5 cut(s) 76, 99, 150, 182, 288
Sau96I GGNCC 3 cut(s) 221, 301, 345
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 3 cut(s) 293, 304, 349
SduI GDGCHC 1 cut(s) 355
SetI ASST 8 cut(s) 25, 39, 55, 59, 67, 111, 194, 212
SfuI TTCGAA 1 cut(s) 47
SinI GGWCC 1 cut(s) 221
SmlI CTYRAG 2 cut(s) 85, 175
SmoI CTYRAG 2 cut(s) 85, 175
Sse9I AATT 1 cut(s) 251
SsiI CCGC 7 cut(s) 95, 122, 125, 162, 245, 260, 272
SspMI CTAG 3 cut(s) 54, 66, 391
StyD4I CCNGG 3 cut(s) 291, 302, 347
StyI CCWWGG 1 cut(s) 53
TaiI ACGT 1 cut(s) 212
TaqI TCGA 2 cut(s) 47, 61
TasI AATT 1 cut(s) 251
TauI GCSGC 4 cut(s) 98, 125, 165, 247
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseI GCWGC 3 cut(s) 69, 72, 109
TspDTI ATGAA 1 cut(s) 375
TspGWI ACGGA 1 cut(s) 234
Tth111I GACNNNGTC 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 221
XmaJI CCTAGG 1 cut(s) 53
XspI CTAG 3 cut(s) 54, 66, 391
ZraI GACGTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.