Rh2BG629600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017436
Physical Location & Seq
Reverse (-)
85145983 .. 85146222
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG629600.1

Sequence Viewer

Length: 240 bp
ATGATCTGTGGACAGGGAAGGCCACCAGACGGGACTGCAGCTATGTATACTGTGGAGGCAACTCCTCTGTCGGCTGGGGTTTGGAAAAGCAGGCCGCCAGAGCTGTGGTCGAAGGGGATGCCGCTGGAGGTCTTAACGGCGGTGGAGGTGAAGAAGCAGAGTGATTCTTCTGTGCTATTTGCTCGGGTTTGGGCCTGGGCTCAAATTTGGGCTGATGGGGCAGGGGAGTCATCCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.5

Weight (kDa)

5.18

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 47
AciI CCGC 3 cut(s) 95, 122, 140
AcsI RAATTY 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 29
AjnI CCWGG 1 cut(s) 194
AluBI AGCT 2 cut(s) 41, 103
AluI AGCT 2 cut(s) 41, 103
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 3 cut(s) 20, 92, 192
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 160
AvaI CYCGRG 1 cut(s) 183
BanII GRGCYC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 50
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 153
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 1 cut(s) 196
BfmI CTRYAG 1 cut(s) 36
BisI GCNGC 3 cut(s) 39, 95, 122
BlsI GCNGC 3 cut(s) 40, 96, 123
Bme1390I CCNGG 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 2 cut(s) 123, 230
BseLI CCNNNNNNNGG 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 74
BshFI GGCC 3 cut(s) 22, 94, 194
BsiHKCI CYCGRG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 3 cut(s) 22, 94, 194
BsoBI CYCGRG 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 3 cut(s) 95, 122, 140
BspANI GGCC 3 cut(s) 22, 94, 194
BspMAI CTGCAG 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 1 cut(s) 3
BssNAI GTATAC 1 cut(s) 48
Bst1107I GTATAC 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 92
BstF5I GGATG 2 cut(s) 123, 230
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 100, 218
BstNI CCWGG 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 105
BstZ17I GTATAC 1 cut(s) 48
BsuRI GGCC 3 cut(s) 22, 94, 194
BtsCI GGATG 2 cut(s) 123, 230
Cac8I GCNNGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 192
CviJI RGCY 8 cut(s) 22, 41, 74, 94, 103, 194, 200, 212
CviKI_1 RGCY 8 cut(s) 22, 41, 74, 94, 103, 194, 200, 212
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 202
FaiI YATR 2 cut(s) 44, 48
FaqI GGGAC 1 cut(s) 46
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 3 cut(s) 39, 95, 122
FokI GGATG 2 cut(s) 130, 217
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 3 cut(s) 39, 95, 122
GluI GCNGC 3 cut(s) 39, 95, 122
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 3 cut(s) 22, 94, 194
HinfI GANTC 2 cut(s) 164, 227
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 2 cut(s) 11, 48
Hpy8I GTNNAC 2 cut(s) 11, 48
HpyAV CCTTC 2 cut(s) 12, 106
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 218
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 8 cut(s) 39, 60, 76, 110, 111, 181, 207, 208
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 1 cut(s) 108
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 159, 163
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 1 cut(s) 204
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 4 cut(s) 49, 75, 121, 139
MseI TTAA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 196
MvaI CCWGG 1 cut(s) 196
MwoI GCNNNNNNNGC 2 cut(s) 100, 218
NdeII GATC 1 cut(s) 3
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 3 cut(s) 40, 96, 123
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 194
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 194
PspPI GGNCC 1 cut(s) 192
PstI CTGCAG 1 cut(s) 40
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 3 cut(s) 39, 95, 122
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 1 cut(s) 202
SetI ASST 4 cut(s) 43, 105, 132, 150
SfaNI GCATC 1 cut(s) 108
SfcI CTRYAG 1 cut(s) 36
Sse9I AATT 1 cut(s) 204
SsiI CCGC 3 cut(s) 95, 122, 140
StyD4I CCNGG 1 cut(s) 194
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 110
TasI AATT 1 cut(s) 204
TauI GCSGC 2 cut(s) 97, 124
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TseI GCWGC 1 cut(s) 38
XapI RAATTY 1 cut(s) 204
XmiI GTMKAC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.