Rh7CG201700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0017436
Physical Location & Seq
Reverse (-)
17949584 .. 17950859
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG201700.1

Sequence Viewer

Length: 345 bp
ATGGCGGCAGTCCTTGCAGGTTTGTTGAGCGGCGAGGGTTGCGGTGGAGTGTGCTTGTTTTGGGGCGGTGAACTGATCCTGTTTGGTCGGGCAGTTGGGTCTCGAAGTTGCGGACAGATTTCGGATCCGCAGGGGGATCTGTTGCAGGGTAGCAGGCAGAGGCTTCGGTGGGCTTTGCTTGAGATGGGATGGCACGTTTGGAGAAGTCGGCCGCCAGAGCTACGGGGCGTCGCCGGAGAACAGACCGGCGGTGGTGGGGTGCACAGGGATGCTCCTCCTTTGTCGGCTAGGGTTTGGGCCTGGGTTCAACCTTGGGCTGATGGGGCAGGGGCTTATTCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.11

Weight (kDa)

8.66

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 8
AccBSI CCGCTC 1 cut(s) 30
AciI CCGC 8 cut(s) 5, 30, 42, 66, 111, 128, 212, 249
AclWI GGATC 4 cut(s) 70, 119, 132, 144
AcoI YGGCCR 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 228
AgsI TTSAA 1 cut(s) 308
AjnI CCWGG 1 cut(s) 299
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 1 cut(s) 105
Alw44I GTGCAC 1 cut(s) 260
AlwI GGATC 4 cut(s) 70, 119, 132, 144
AoxI GGCC 2 cut(s) 209, 297
ApaLI GTGCAC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 264
BamHI GGATCC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 264
BccI CCATC 3 cut(s) 178, 183, 314
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BciT130I CCWGG 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 288
BfuAI ACCTGC 1 cut(s) 8
BisI GCNGC 3 cut(s) 6, 31, 212
BlsI GCNGC 3 cut(s) 7, 32, 213
Bme1390I CCNGG 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 301
BmsI GCATC 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 300, 311
Bse118I RCCGGY 1 cut(s) 245
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 2 cut(s) 300, 311
BseGI GGATG 2 cut(s) 194, 274
BseRI GAGGAG 1 cut(s) 264
BseSI GKGCMC 1 cut(s) 264
BseX3I CGGCCG 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 212
BshFI GGCC 2 cut(s) 211, 299
BsiEI CGRYCG 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 2 cut(s) 234, 246
BsmAI GTCTC 1 cut(s) 105
BsnI GGCC 2 cut(s) 211, 299
Bso31I GGTCTC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 3 cut(s) 75, 124, 136
BspACI CCGC 8 cut(s) 5, 30, 42, 66, 111, 128, 212, 249
BspANI GGCC 2 cut(s) 211, 299
BspLI GGNNCC 1 cut(s) 126
BspMI ACCTGC 1 cut(s) 8
BspPI GGATC 4 cut(s) 70, 119, 132, 144
BspTNI GGTCTC 1 cut(s) 105
BsrBI CCGCTC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 245
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 300, 311
BssMI GATC 3 cut(s) 75, 124, 136
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 301
BstACI GRCGYC 1 cut(s) 228
BstAPI GCANNNNNTGC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 155
BstF5I GGATG 2 cut(s) 194, 274
BstKTI GATC 3 cut(s) 78, 127, 139
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 3 cut(s) 75, 124, 136
BstMCI CGRYCG 1 cut(s) 212
BstMWI GCNNNNNNNGC 4 cut(s) 14, 39, 217, 323
BstNI CCWGG 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 299
BstSLI GKGCMC 1 cut(s) 264
BstX2I RGATCY 2 cut(s) 124, 136
BstYI RGATCY 2 cut(s) 124, 136
BstZI CGGCCG 1 cut(s) 209
BsuRI GGCC 2 cut(s) 211, 299
BtsCI GGATG 2 cut(s) 194, 274
BveI ACCTGC 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 155
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 297
CseI GACGC 1 cut(s) 217
CviJI RGCY 8 cut(s) 163, 173, 211, 220, 287, 299, 317, 332
CviKI_1 RGCY 8 cut(s) 163, 173, 211, 220, 287, 299, 317, 332
DpnI GATC 3 cut(s) 77, 126, 138
DpnII GATC 3 cut(s) 75, 124, 136
EaeI YGGCCR 1 cut(s) 209
EagI CGGCCG 1 cut(s) 209
EclXI CGGCCG 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 311
Eco31I GGTCTC 1 cut(s) 105
Eco52I CGGCCG 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 311
Fnu4HI GCNGC 3 cut(s) 6, 31, 212
FokI GGATG 2 cut(s) 201, 281
Fsp4HI GCNGC 3 cut(s) 6, 31, 212
FspBI CTAG 1 cut(s) 288
GluI GCNGC 3 cut(s) 6, 31, 212
HaeIII GGCC 2 cut(s) 211, 299
HapII CCGG 2 cut(s) 234, 246
HgaI GACGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 228
HpaII CCGG 2 cut(s) 234, 246
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 2 cut(s) 71, 262
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 102
Hpy8I GTNNAC 2 cut(s) 71, 262
Hpy99I CGWCG 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 3 cut(s) 17, 145, 262
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 39, 217, 323
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 228
Kzo9I GATC 3 cut(s) 75, 124, 136
LmnI GCTCC 1 cut(s) 277
LweI GCATC 1 cut(s) 259
MaeI CTAG 1 cut(s) 288
MaeII ACGT 1 cut(s) 195
MalI GATC 3 cut(s) 77, 126, 138
MbiI CCGCTC 1 cut(s) 30
MboI GATC 3 cut(s) 75, 124, 136
MflI RGATCY 2 cut(s) 124, 136
MhlI GDGCHC 1 cut(s) 264
MnlI CCTC 3 cut(s) 28, 153, 285
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 2 cut(s) 234, 246
MspR9I CCNGG 1 cut(s) 301
MvaI CCWGG 1 cut(s) 301
MwoI GCNNNNNNNGC 4 cut(s) 14, 39, 217, 323
NdeII GATC 3 cut(s) 75, 124, 136
NlaIV GGNNCC 1 cut(s) 126
PkrI GCNGC 3 cut(s) 7, 32, 213
Psp6I CCWGG 1 cut(s) 299
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 297
PsuI RGATCY 2 cut(s) 124, 136
RseI CAYNNNNRTG 1 cut(s) 267
SatI GCNGC 3 cut(s) 6, 31, 212
Sau3AI GATC 3 cut(s) 75, 124, 136
Sau96I GGNCC 1 cut(s) 297
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 1 cut(s) 264
SetI ASST 4 cut(s) 22, 198, 222, 313
SfaNI GCATC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SsiI CCGC 8 cut(s) 5, 30, 42, 66, 111, 128, 212, 249
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 1 cut(s) 311
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 103
TauI GCSGC 3 cut(s) 8, 33, 214
VneI GTGCAC 1 cut(s) 260
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.