Rh6AG201500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017436
Physical Location & Seq
Reverse (-)
36124868 .. 36130709
5842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG201500.1

Sequence Viewer

Length: 318 bp
ATGAGTCAAGGGGGTCTCCGAGCTTCTCAGAGTGACCTCGGTTTTTCGAAACCTAGGTTTCGACCTAGCGGCGGCGATCTTGCAAGGCGGTCTTCCCTTAAGCAAGGCAGCGATCGTGGAGCGGTGAGATACTGCCGCGGTGTGGGACCGGGTCTCAGCGTTGATCGTGAGTTGCAGCGAGAGGTTAGAGGCCTCTTTGATCTTGTCTTTTCTGGGTTAGATCCGGTCTTTGAGCGTCGTGCAGCGTCAACGGCTGGTGGTTGTTGGCTCTGGTTGCCGCGGTTGGCTAGGCCAGTTGCTCAGGTATACACCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.46

Weight (kDa)

11.01

Isoelectric Point (pI)

55.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 306
AccII CGCG 2 cut(s) 138, 280
AciI CCGC 8 cut(s) 69, 72, 88, 122, 136, 138, 278, 280
AclWI GGATC 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 71, 142
AflII CTTAAG 1 cut(s) 98
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw26I GTCTC 2 cut(s) 20, 158
AlwI GGATC 1 cut(s) 215
AoxI GGCC 2 cut(s) 190, 290
ApeKI GCWGC 3 cut(s) 108, 175, 242
AspA2I CCTAGG 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 136
AsuII TTCGAA 1 cut(s) 47
AvaII GGWCC 1 cut(s) 146
AvrII CCTAGG 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 120, 187, 254
BceAI ACGGC 1 cut(s) 267
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 20, 158
BfaI CTAG 3 cut(s) 54, 66, 288
BfrI CTTAAG 1 cut(s) 98
BisI GCNGC 7 cut(s) 70, 73, 109, 136, 176, 243, 278
BlnI CCTAGG 1 cut(s) 53
BlsI GCNGC 7 cut(s) 71, 74, 110, 137, 177, 244, 279
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 300
Bpu14I TTCGAA 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 150
BsaI GGTCTC 2 cut(s) 20, 158
BsaJI CCNNGG 4 cut(s) 37, 53, 136, 278
BsaWI WCCGGW 1 cut(s) 223
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 142
Bse1I ACTGG 1 cut(s) 293
BseDI CCNNGG 4 cut(s) 37, 53, 136, 278
BseLI CCNNNNNNNGG 2 cut(s) 71, 142
BseMII CTCAG 3 cut(s) 41, 169, 314
BseNI ACTGG 1 cut(s) 293
BseXI GCAGC 3 cut(s) 120, 187, 254
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 2 cut(s) 138, 280
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 2 cut(s) 192, 292
BsiEI CGRYCG 1 cut(s) 115
BsiSI CCGG 2 cut(s) 149, 224
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 71, 142
BsmAI GTCTC 2 cut(s) 20, 158
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 2 cut(s) 192, 292
Bso31I GGTCTC 2 cut(s) 20, 158
Bsp119I TTCGAA 1 cut(s) 47
Bsp143I GATC 5 cut(s) 76, 112, 163, 199, 220
BspACI CCGC 8 cut(s) 69, 72, 88, 122, 136, 138, 278, 280
BspANI GGCC 2 cut(s) 192, 292
BspCNI CTCAG 3 cut(s) 40, 168, 313
BspFNI CGCG 2 cut(s) 138, 280
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 1 cut(s) 215
BspT104I TTCGAA 1 cut(s) 47
BspTI CTTAAG 1 cut(s) 98
BspTNI GGTCTC 2 cut(s) 20, 158
BsrBI CCGCTC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 4 cut(s) 37, 53, 136, 278
BssMI GATC 5 cut(s) 76, 112, 163, 199, 220
BssNAI GTATAC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 53
Bst1107I GTATAC 1 cut(s) 307
BstAFI CTTAAG 1 cut(s) 98
BstBI TTCGAA 1 cut(s) 47
BstDEI CTNAG 3 cut(s) 27, 155, 300
BstDSI CCRYGG 2 cut(s) 136, 278
BstFNI CGCG 2 cut(s) 138, 280
BstKTI GATC 5 cut(s) 79, 115, 166, 202, 223
BstMAI GTCTC 2 cut(s) 20, 158
BstMBI GATC 5 cut(s) 76, 112, 163, 199, 220
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 2 cut(s) 251, 274
BstSCI CCNGG 1 cut(s) 148
BstUI CGCG 2 cut(s) 138, 280
BstV1I GCAGC 3 cut(s) 120, 187, 254
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BstZ17I GTATAC 1 cut(s) 307
BsuRI GGCC 2 cut(s) 192, 292
BtgI CCRYGG 2 cut(s) 136, 278
Cfr13I GGNCC 1 cut(s) 146
Cfr42I CCGCGG 2 cut(s) 139, 281
CseI GACGC 2 cut(s) 224, 234
CviJI RGCY 6 cut(s) 23, 192, 254, 268, 287, 292
CviKI_1 RGCY 6 cut(s) 23, 192, 254, 268, 287, 292
DdeI CTNAG 3 cut(s) 27, 155, 300
DpnI GATC 5 cut(s) 78, 114, 165, 201, 222
DpnII GATC 5 cut(s) 76, 112, 163, 199, 220
Eco130I CCWWGG 1 cut(s) 53
Eco147I AGGCCT 1 cut(s) 192
Eco31I GGTCTC 2 cut(s) 20, 158
Eco47I GGWCC 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 53
FaiI YATR 2 cut(s) 307, 316
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FaqI GGGAC 1 cut(s) 159
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 7 cut(s) 70, 73, 109, 136, 176, 243, 278
Fsp4HI GCNGC 7 cut(s) 70, 73, 109, 136, 176, 243, 278
FspBI CTAG 3 cut(s) 54, 66, 288
GluI GCNGC 7 cut(s) 70, 73, 109, 136, 176, 243, 278
HaeIII GGCC 2 cut(s) 192, 292
HapII CCGG 2 cut(s) 149, 224
HgaI GACGC 2 cut(s) 224, 234
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 149, 224
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 2 cut(s) 249, 307
Hpy188I TCNGA 2 cut(s) 20, 30
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 2 cut(s) 249, 307
Hpy99I CGWCG 1 cut(s) 240
HpyCH4V TGCA 3 cut(s) 83, 175, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 274
HpyF3I CTNAG 3 cut(s) 27, 155, 300
KspI CCGCGG 2 cut(s) 139, 281
Kzo9I GATC 5 cut(s) 76, 112, 163, 199, 220
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 7 cut(s) 162, 198, 237, 240, 256, 287, 306
Lsp1109I GCAGC 3 cut(s) 120, 187, 254
MaeI CTAG 3 cut(s) 54, 66, 288
MaeIII GTNAC 1 cut(s) 32
MalI GATC 5 cut(s) 78, 114, 165, 201, 222
MbiI CCGCTC 1 cut(s) 122
MboI GATC 5 cut(s) 76, 112, 163, 199, 220
MboII GAAGA 1 cut(s) 84
MflI RGATCY 1 cut(s) 220
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 4 cut(s) 47, 175, 182, 203
MseI TTAA 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 138, 280
MspCI CTTAAG 1 cut(s) 98
MspI CCGG 2 cut(s) 149, 224
MspR9I CCNGG 1 cut(s) 150
MvnI CGCG 2 cut(s) 138, 280
MwoI GCNNNNNNNGC 2 cut(s) 251, 274
NciI CCSGG 1 cut(s) 150
NdeII GATC 5 cut(s) 76, 112, 163, 199, 220
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 32
NspV TTCGAA 1 cut(s) 47
PceI AGGCCT 1 cut(s) 192
PflFI GACNNNGTC 1 cut(s) 150
PkrI GCNGC 7 cut(s) 71, 74, 110, 137, 177, 244, 279
Ple19I CGATCG 1 cut(s) 115
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 220
PsyI GACNNNGTC 1 cut(s) 150
PvuI CGATCG 1 cut(s) 115
SacII CCGCGG 2 cut(s) 139, 281
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 7 cut(s) 70, 73, 109, 136, 176, 243, 278
Sau3AI GATC 5 cut(s) 76, 112, 163, 199, 220
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 150
SetI ASST 8 cut(s) 25, 39, 55, 59, 67, 186, 306, 314
Sfr303I CCGCGG 2 cut(s) 139, 281
SfuI TTCGAA 1 cut(s) 47
SgrBI CCGCGG 2 cut(s) 139, 281
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SseBI AGGCCT 1 cut(s) 192
SsiI CCGC 8 cut(s) 69, 72, 88, 122, 136, 138, 278, 280
SspMI CTAG 3 cut(s) 54, 66, 288
StuI AGGCCT 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 1 cut(s) 53
TaqI TCGA 2 cut(s) 47, 61
TauI GCSGC 4 cut(s) 72, 75, 138, 280
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 3 cut(s) 108, 175, 242
Tsp45I GTSAC 1 cut(s) 32
Tth111I GACNNNGTC 1 cut(s) 150
Vha464I CTTAAG 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 146
XmaJI CCTAGG 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 3 cut(s) 54, 66, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.